MCMC inference from individual genetic data based on a spatial statistical model

[Package List] [Top]
FormatGenotypes Formatting file of genotype data.
Fstat F statistics
Geneland Simulation and inference of a spatial statistical model for landscape genetics.
mcmcFmodel Inference in a spatial statistical model
PlotDrift Plot the drift factors
PlotFreq Plot the trace of allele frequencies in present time population and optionnaly print it.
PlotFreqA Plots allele frequencies in ancestral population along the MCMC run and optionally prints it
Plotnclass Plot of number of populations along the MCMC run
Plotntile Plot of number of tiles along the MCMC run
PlotTessellation Maps of posterior probability of membership
PosteriorMode Map of mode of posterior distribution of population membership
PostProcessChain Computation for maps of posterior probability of population membership
rdiscr Internal function for the simulation of a categorical random variable
setplot Set graphical parameters for geographical maps so as to have equal ratio for horizontal and vertical axis. Internal function.
simFmodel Simulation of multi-locus genetic data from the spatial F-model