BEST.kendall |
BLAST type search for similar co-expressions with controlled FDR and MAS using Kendall correlation statistic |
BEST.pearson |
BLAST type search for similar co-expressions with controlled FDR and MAS using Pearson correlation statistic |
cor.confint |
Asymptotic confidence intervals of Pearson correlation coefficient |
corfdrci |
Two-stage screening procedure for screening gene pairs based on Pearson correlation statistic |
corfdrci.inv |
Inverse screening procedure based on Pearson correlation coefficient |
dat |
Part of galactose metabolism data. Ideker et al. Science, 292:929-934 |
getBM |
Generate Pajek compatible matrix from screened gene pairs |
kendall.confint |
Asymptotic confidence intervals of Pearson correlation coefficient |
kendallfdrci |
Two-stage screening procedure based on Kendall correlation coefficient |
pcor.confint |
Asymptotic confidence intervals of partial correlation coefficient |
pcorfdrci |
Two-stage screening procedure based on partial correlation coefficient in Graphic Gaussian Model framework |
pcorfdrci.inv |
Inverse screening procedure based on Kendall correlation coefficient |
priorclust |
Regular "prior" clustering |
sm.name |
Extract gene names from data matrix |
spclust |
Network constrained "posterior" clustering |