==.genotype |
Genotype or Haplotype Objects. |
==.haplotype |
Genotype or Haplotype Objects. |
allele |
Extract Features of Genotype objects |
allele.count.2.genotype |
Undocumented functions |
allele.count.genotype |
Genotype or Haplotype Objects. |
allele.names |
Extract Features of Genotype objects |
as.character.gene |
Create and Manipulate Locus, Gene, and Marker Objects |
as.character.locus |
Create and Manipulate Locus, Gene, and Marker Objects |
as.character.marker |
Create and Manipulate Locus, Gene, and Marker Objects |
as.factor |
Undocumented functions |
as.factor.allele.genotype |
Undocumented functions |
as.factor.default |
Undocumented functions |
as.factor.genotype |
Undocumented functions |
as.genotype |
Genotype or Haplotype Objects. |
as.genotype.allele.count |
Genotype or Haplotype Objects. |
as.genotype.character |
Genotype or Haplotype Objects. |
as.genotype.default |
Genotype or Haplotype Objects. |
as.genotype.factor |
Genotype or Haplotype Objects. |
as.genotype.genotype |
Genotype or Haplotype Objects. |
as.genotype.haplotype |
Genotype or Haplotype Objects. |
as.genotype.table |
Genotype or Haplotype Objects. |
as.haplotype |
Genotype or Haplotype Objects. |
binsearch |
Binary Search |
carrier |
Extract Features of Genotype objects |
ci.balance |
Experimental Function to Correct Confidence Intervals At or Near Boundaries of the Parameter Space by 'Sliding' the Interval on the Quantile Scale. |
diseq |
Estimate or Compute Confidence Interval for the Single-Marker Disequilibrium |
gene |
Create and Manipulate Locus, Gene, and Marker Objects |
geno.as.array |
Undocumented functions |
genotype |
Genotype or Haplotype Objects. |
getgene |
Create and Manipulate Locus, Gene, and Marker Objects |
getlocus |
Create and Manipulate Locus, Gene, and Marker Objects |
getmarker |
Create and Manipulate Locus, Gene, and Marker Objects |
gregorius |
Probability of Observing All Alleles with a Given Frequency in a Sample of a Specified Size. |
hap |
Undocumented functions |
hapambig |
Undocumented functions |
hapenum |
Undocumented functions |
hapfreq |
Undocumented functions |
haplotype |
Genotype or Haplotype Objects. |
hapmcmc |
Undocumented functions |
hapshuffle |
Undocumented functions |
heterozygote |
Extract Features of Genotype objects |
heterozygote.genotype |
Genotype or Haplotype Objects. |
homozygote |
Extract Features of Genotype objects |
homozygote.genotype |
Genotype or Haplotype Objects. |
HWE.chisq |
Perform Chi-Square Test for Hardy-Weinberg Equilibrium |
HWE.exact |
Exact Test of Hardy-Weinberg Equilibrium for 2-Allele Markers |
HWE.test |
Estimate Disequilibrium and Test for Hardy-Weinberg Equilibrium |
is.gene |
Create and Manipulate Locus, Gene, and Marker Objects |
is.genotype |
Genotype or Haplotype Objects. |
is.haplotype |
Genotype or Haplotype Objects. |
is.locus |
Create and Manipulate Locus, Gene, and Marker Objects |
is.marker |
Create and Manipulate Locus, Gene, and Marker Objects |
LD |
Pairwise linkage disequilibrium between genetic markers. |
LDplot |
Textual and graphical display of linkage disequilibrium (LD) objects |
LDtable |
Textual and graphical display of linkage disequilibrium (LD) objects |
library.pos |
Loading and Listing of Packages (backported from 1.8.0) |
locus |
Create and Manipulate Locus, Gene, and Marker Objects |
makeGenotypes |
Convert columns in a dataframe to genotypes or haplotypes |
makeHaplotypes |
Convert columns in a dataframe to genotypes or haplotypes |
marker |
Create and Manipulate Locus, Gene, and Marker Objects |
mknum |
Undocumented functions |
mourant |
Undocumented functions |
nallele |
Genotype or Haplotype Objects. |
plot.LD.data.frame |
Textual and graphical display of linkage disequilibrium (LD) objects |
power.casectrl |
Power for case-control genetics study |
print.allele.count |
Genotype or Haplotype Objects. |
print.allele.genotype |
Genotype or Haplotype Objects. |
print.diseq |
Estimate or Compute Confidence Interval for the Single-Marker Disequilibrium |
print.gene |
Create and Manipulate Locus, Gene, and Marker Objects |
print.genotype |
Genotype or Haplotype Objects. |
print.HWE.test |
Estimate Disequilibrium and Test for Hardy-Weinberg Equilibrium |
print.LD |
Textual and graphical display of linkage disequilibrium (LD) objects |
print.locus |
Create and Manipulate Locus, Gene, and Marker Objects |
print.marker |
Create and Manipulate Locus, Gene, and Marker Objects |
print.summary.genotype |
Allele and Genotype Frequency from a Genotype or Haplotype Object |
print.summary.LD.data.frame |
Textual and graphical display of linkage disequilibrium (LD) objects |
shortsummary.genotype |
Undocumented functions |
summary.genotype |
Allele and Genotype Frequency from a Genotype or Haplotype Object |
summary.LD.data.frame |
Textual and graphical display of linkage disequilibrium (LD) objects |
write.marker.file |
Create genetics data files |
write.pedigree.file |
Create genetics data files |
write.pop.file |
Create genetics data files |
[.genotype |
Genotype or Haplotype Objects. |
[.haplotype |
Genotype or Haplotype Objects. |