plotmeltingcurve {phyloarray} | R Documentation |
Make a plot of a melting curve.
plotmeltingcurve(datalist, dye="R", probe=NULL)
datalist |
An object of type phyloarray |
dye |
The dye of which the background should be plotted, i.e. "R" or "G". |
probe |
The name of the probe ('Probename') which should be plotted. |
At present date, only the signal/background ratio is calculated and plotted. In the future, other methods may be included.
The probe-ID's to be plotted are taken from the list of probes. If
more than one probe has the same 'Probename', all the probes are
plotted in the figure, using different point character (from type 1 to
...). Each next column, i.e. ID of probe of the same 'Probename'
(match, mismatch, ...) is plotted using a different color, going from
color 1 to ... See par
and
plot
for more information about characters and
colors.
Kurt Sys (kurt.sys@advalvas.be)
# load data this-is-escaped-codenormal-bracket36bracket-normal, i.e. this-is-escaped-codenormal-bracket37bracket-normal data(Phylodata) # for calculation of histogram cutoffs for good/bad spots # scans <- histcutoffs(scans) # # if background calculation is necessary # scans <- calcbackgroud(scans) plotmeltingcurve(scans, probe="Bacteria1")