sortdata {phyloarray}R Documentation

Sorting data

Description

Sort data from high to low, based on the data of the first column in each data matrix.

Usage

  sortdata(datalist, dye="R", method="subtrbg")

Arguments

datalist An object of type phyloarray
dye The dye used for sorting data, i.e. "R" or "G".
method The method for sorting. Only one method is included yet, i.e. "subtrbg", in which the data is sorted by subtracting the background from the signal. More methods will be included in the future.

Value

Note

Author(s)

Kurt Sys (kurt.sys@advalvas.be)

References

See Also

Scandataraw Phylodata

plot lines par

Examples

  # load data this-is-escaped-codenormal-bracket32bracket-normal, i.e. this-is-escaped-codenormal-bracket33bracket-normal
  data(Phylodata)

  # for calculation of histogram cutoffs for good/bad spots
  # scans <- histcutoffs(scans)
  #
  # if background calculation is necessary
  # scans <- calcbackgroud(scans)

  # the first 25 rows of sorted scans$R
  sortdata(scans)$R[1:25, ]

  # and their ID's
  sortdata(scans)$ID[1:25]

  # sort scans on green
  scans <- sortdata(scans, dye="G")

  # check probes2probenames

[Package phyloarray version 0.1-1 Index]