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| TreePar-package | Estimating diversification rate changes in phylogenies |
| bd.ME.CI | bd.ME.CI: Calculates the confidence intervals for point estimates obtained from bd.ME.optim |
| bd.ME.optim | bd.ME.optim: Estimates the maximum likelihood diversification rates which may change at given points in the past |
| bd.MEt.CI | bd.MEt.CI: Calculates the confidence intervals for point estimates obtained from bd.ME.optim for varying t |
| bd.MEt.optim | bd.MEt.optim: Estimates the maximum likelihood diversification rates and rate shift times |
| TreePar | Estimating diversification rate changes in phylogenies |