Data Cloning and MCMC Tools for Maximum Likelihood Methods


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Documentation for package ‘dclone’ version 1.2-0

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dclone-package Data Cloning
as.mcmc.list.bugs Fit BUGS models with cloned data
bugs.fit Fit BUGS models with cloned data
chisq.diag Maximum Eigenvalue of the Posterior Variance-Covariance Matrix
clean.jags.model Write and remove model file
clusterSeed Parallel random seeds and kinds
clusterSize Optimizing the number of workers
clusterSplitSB Size balancing
coef.mcmc.list Methods for the 'mcmc.list' class
confint.mcmc.list.dc Methods for the 'mcmc.list' class
custommodel Write and remove model file
dc.fit Iterative model fitting with data cloning
dc.parfit Parallel model fitting with data cloning
dcdiag Retrieve descriptive statistics from fitted objects to evaluate convergence
dcdiag.default Retrieve descriptive statistics from fitted objects to evaluate convergence
dcdim Cloning R objects
dclone Cloning R objects
dclone.dcdim Cloning R objects
dclone.default Cloning R objects
dclone.list Cloning R objects
dcsd Methods for the 'mcmc.list' class
dcsd.mcmc.list Methods for the 'mcmc.list' class
dctable Retrieve descriptive statistics from fitted objects to evaluate convergence
dctable.default Retrieve descriptive statistics from fitted objects to evaluate convergence
errlines Plot error bars
errlines.default Plot error bars
extractdcdiag Retrieve descriptive statistics from fitted objects to evaluate convergence
extractdcdiag.default Retrieve descriptive statistics from fitted objects to evaluate convergence
extractdctable Retrieve descriptive statistics from fitted objects to evaluate convergence
extractdctable.default Retrieve descriptive statistics from fitted objects to evaluate convergence
jags.fit Fit JAGS models with cloned data
jags.parfit Parallel computing with JAGS
lambdamax.diag Maximum Eigenvalue of the Posterior Variance-Covariance Matrix
make.symmetric Make a square matrix symmetric by averaging.
mcmcapply Calculations on 'mcmc.list' objects
nclones Number of Clones
nclones.default Number of Clones
nclones.list Number of Clones
ovenbird Abundances of ovenbird in Alberta
parLapplySB Size balancing
parLapplySLB Size balancing
plot.dcdiag Retrieve descriptive statistics from fitted objects to evaluate convergence
plot.dctable Retrieve descriptive statistics from fitted objects to evaluate convergence
plotClusterSize Optimizing the number of workers
quantile.mcmc.list Methods for the 'mcmc.list' class
regmod Exemplary MCMC list object
snowWrapper Parallel wrapper function to call from within a function
update.mcmc.list Automatic updating of an MCMC object
updated.model Automatic updating of an MCMC object
vcov.mcmc.list.dc Methods for the 'mcmc.list' class
write.jags.model Write and remove model file