Dynamical Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data.


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Documentation for package ‘ddepn’ version 1.2

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ddepn-package Dynamic Deterministic Effects Propagation Networks: Infer signalling networks from high througput array data.
compare.graphs.tc compare.graphs.tc
ddepn ddepn
get.arrowhead plotdetailed get.labels get.arrowhead get.arrowtail
get.arrowtail plotdetailed get.labels get.arrowhead get.arrowtail
get.labels plotdetailed get.labels get.arrowhead get.arrowtail
get.phi.final Construct final network from GA or mcmc result.
get.phi.final.mcmc Construct final network from GA or mcmc result.
kegggraphs kegggraphs
makedata Generate artificial dataset given a network and list of stimuli.
mcmc_ddepn mcmc_ddepn - Perform MCMC sampling for DDEPN.
netga netga - Perform network search using a genetic algorithm.
plotdetailed plotdetailed get.labels get.arrowhead get.arrowtail
plotrepresult Plot result of reconstruction.
prior Calculate a structure prior. Usually called internally.
runmcmc mcmc_ddepn - Perform MCMC sampling for DDEPN.
signalnetwork Sample a random signalling network.
simulatedata simulatedata