ddepn-package |
Dynamic Deterministic Effects Propagation Networks: Infer signalling networks from high througput array data. |
compare.graphs.tc |
compare.graphs.tc |
ddepn |
ddepn |
get.arrowhead |
plotdetailed
get.labels
get.arrowhead
get.arrowtail |
get.arrowtail |
plotdetailed
get.labels
get.arrowhead
get.arrowtail |
get.labels |
plotdetailed
get.labels
get.arrowhead
get.arrowtail |
get.phi.final |
Construct final network from GA or mcmc result. |
get.phi.final.mcmc |
Construct final network from GA or mcmc result. |
kegggraphs |
kegggraphs |
makedata |
Generate artificial dataset given a network and list of stimuli. |
mcmc_ddepn |
mcmc_ddepn - Perform MCMC sampling for DDEPN. |
netga |
netga - Perform network search using a genetic algorithm. |
plotdetailed |
plotdetailed
get.labels
get.arrowhead
get.arrowtail |
plotrepresult |
Plot result of reconstruction. |
prior |
Calculate a structure prior. Usually called internally. |
runmcmc |
mcmc_ddepn - Perform MCMC sampling for DDEPN. |
signalnetwork |
Sample a random signalling network. |
simulatedata |
simulatedata |