The Iterative Signature Algorithm


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Documentation for package ‘isa2’ version 0.2.1

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isa2-package The isa package
generate.seeds Generate seed vectors for the Iterative Signature Algorithm
images Image plots of biclusters
isa Iterative Signature Algorithm
isa,matrix-method Iterative Signature Algorithm
isa.biclust Convert ISA modules to a Biclust class, as defined by the biclust package
isa.filter.robust Robustness of ISA biclusters
isa.filter.robust,matrix-method Robustness of ISA biclusters
isa.in.silico Generate in-silico input data for biclustering algorithms
isa.iterate The Iterative Signature Algorithm
isa.iterate,list-method The Iterative Signature Algorithm
isa.normalize Normalize input data for use with ISA
isa.normalize,matrix-method Normalize input data for use with ISA
isa.option Options for the isa package
isa.sweep Create a hierarchical structure of ISA biclusters
isa.sweep,matrix-method Create a hierarchical structure of ISA biclusters
isa.unique Filter out biclusters that are very similar to each other
isa.unique,list,list-method Filter out biclusters that are very similar to each other
plotModules Image plots of biclusters
plotModules,list-method Image plots of biclusters
robustness Robustness of ISA biclusters
robustness,list-method Robustness of ISA biclusters
sweep.graph Create a hierarchical structure of ISA biclusters
sweep.graph,list-method Create a hierarchical structure of ISA biclusters