Parameter estimation and prediction for hidden Markov and semi-Markov models for data with multiple observation sequences.


[Package List] [Top]

Documentation for package ‘mhsmm’ version 0.3.6

User Guides and Package Vignettes

Read overview or browse directory.

Help Pages

addStates Adds a bar representing state sequence.
createTransition Smoothing a discrete time series.
dmvnorm.hsmm Emission ensity function for a multivariate normal emission distribution
dnorm.hsmm Emission density function for normal emission distribution
dpois.hsmm Emission density function for Poisson emission distribution
gammafit Parameter estimation for the Gamma distribution
hmmfit fit a hidden Markov model
hmmspec Specificatin of HMMs
hsmmfit fit a hidden semi-Markov model
hsmmspec Hidden semi-Markov model specification
mstep.mvnorm Performs re-estimation (the M-step) for a multivariate normal emission distribution
mstep.norm Performs re-estimation (the M-step) for a normal emission distribution
mstep.pois Performs re-estimation (the M-step) for a Poisson emission distribution
plot.hsmm Plot function for hsmms
plot.hsmm.data Plot function for hsmm data
predict.hmm Prediction function for hmm
predict.hsmm Prediction for hsmms
predict.smoothDiscrete Smoothing a discrete time series.
print.hmm Print method for hmm objects
print.hmmspec Print function for hmmspec
print.hsmmspec Print function for hsmmspec
print.smoothDiscrete Smoothing a discrete time series.
reproai Artificial insemination times for seven cows
reprocows Reproductive data from seven dairy cows
reproppa Observed lengths of post-partum anoestrus for 73 dairy cows
rmvnorm.hsmm Random number generation from a multivariate normal distributed emission distribution
rnorm.hsmm Random number generation from a normally distributed emission distribution
rpois.hsmm Random number generation from a Poisson distributed emission distribution
sim.mc Markov chain simulation
simulate.hmmspec Simulation of hidden Markov models
simulate.hsmmspec Simulation for HSMMs
smooth.discrete Smoothing a discrete time series.
summary.hmm Summary method for hmm objects
summary.hsmm Summary function for hsmm
summary.smoothDiscrete Smoothing a discrete time series.