Rigorous - NIfTI Input / Output


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Documentation for package ‘oro.nifti’ version 0.2.0

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A C D E G H I N O P Q R S T W X misc

-- A --

anlz Constructor for Analyze
anlz-class Class "anlz"
as,array,nifti-method Force an Object to Belong to the NIfTI Class
as.nifti as.nifti
as<-,array,nifti-method Force an Object to Belong to the NIfTI Class
audit.trail Extract or Replace NIfTI Audit Trail
audit.trail,nifti-method Extract or Replace NIfTI Audit Trail
audit.trail-methods Extract or Replace NIfTI Audit Trail
audit.trail<- Extract or Replace NIfTI Audit Trail
audit.trail<-,nifti-method Extract or Replace NIfTI Audit Trail
aux.file Extract or Replace NIfTI/Analyze Auxiliary File
aux.file,anlz-method Extract or Replace NIfTI/Analyze Auxiliary File
aux.file,nifti-method Extract or Replace NIfTI/Analyze Auxiliary File
aux.file-methods Extract or Replace NIfTI/Analyze Auxiliary File
aux.file<- Extract or Replace NIfTI/Analyze Auxiliary File
aux.file<-,anlz-method Extract or Replace NIfTI/Analyze Auxiliary File
aux.file<-,nifti-method Extract or Replace NIfTI/Analyze Auxiliary File

-- C --

coerce,anlz,nifti-method Force an Object to Belong to the NIfTI Class
coerce,array,nifti-method Force an Object to Belong to the NIfTI Class
coerce,list,nifti-method Force an Object to Belong to the NIfTI Class
coerce-methods Force an Object to Belong to the NIfTI Class
coerce<-,anlz,nifti-method Force an Object to Belong to the NIfTI Class
coerce<-,array,nifti-method Force an Object to Belong to the NIfTI Class
coerce<-,list,nifti-method Force an Object to Belong to the NIfTI Class
convert.bitpix Convert NIfTI Codes
convert.datatype Convert NIfTI Codes
convert.datatype.anlz Convert NIfTI Codes
convert.form Convert NIfTI Codes
convert.intent Convert NIfTI Codes
convert.orient.anlz Convert NIfTI Codes
convert.slice Convert NIfTI Codes
convert.units Convert NIfTI Codes

-- D --

descrip Extract or Replace NIfTI/Analyze Description
descrip,anlz-method Extract or Replace NIfTI/Analyze Description
descrip,nifti-method Extract or Replace NIfTI/Analyze Description
descrip-methods Extract or Replace NIfTI/Analyze Description
descrip<- Extract or Replace NIfTI/Analyze Description
descrip<-,anlz-method Extract or Replace NIfTI/Analyze Description
descrip<-,nifti-method Extract or Replace NIfTI/Analyze Description
dim2freq Bitwise Conversion Subroutines
dim2phase Bitwise Conversion Subroutines
dim2slice Bitwise Conversion Subroutines

-- E --

enableAuditTrail Facilitate the Creation and Modification of Audit Trails

-- G --

getLastCallWithName Facilitate the Creation and Modification of Audit Trails

-- H --

hotmetal Hot Metal Color Table

-- I --

image,anlz-method Methods for Function 'image' in Package 'dcemri'
image,ANY-method Methods for Function 'image' in Package 'dcemri'
image,nifti-method Methods for Function 'image' in Package 'dcemri'
image-methods Methods for Function 'image' in Package 'dcemri'
image.nifti Methods for Function 'image' in Package 'dcemri'
integerTranslation integerTranslation
inverseReorient reorient
invertIntegerTranslation integerTranslation
is.anlz Constructor for Analyze
is.nifti Constructor for NIfTI

-- N --

newAuditTrail Facilitate the Creation and Modification of Audit Trails
nifti Constructor for NIfTI
nifti-class Class "nifti"
niftiAuditTrail-class Class "niftiAuditTrail"
niftiAuditTrailCreated Facilitate the Creation and Modification of Audit Trails
niftiAuditTrailEvent Facilitate the Creation and Modification of Audit Trails
niftiAuditTrailSystemNode Facilitate the Creation and Modification of Audit Trails
niftiAuditTrailSystemNodeEvent Facilitate the Creation and Modification of Audit Trails
niftiAuditTrailToExtension Facilitate the Creation and Modification of Audit Trails
niftiExtension-class Class "niftiExtension"
niftiExtensionSection-class Class "niftiExtensionSection"
niftiExtensionToAuditTrail Facilitate the Creation and Modification of Audit Trails
NSLI Dimension Accessor Functions
nsli Dimension Accessor Functions
NTIM Dimension Accessor Functions
ntim Dimension Accessor Functions

-- O --

oro.nifti.info Facilitate the Creation and Modification of Audit Trails
orthographic Methods for Function 'orthographic' in Package 'dcemri'
orthographic,anlz-method Methods for Function 'orthographic' in Package 'dcemri'
orthographic,array-method Methods for Function 'orthographic' in Package 'dcemri'
orthographic,nifti-method Methods for Function 'orthographic' in Package 'dcemri'
orthographic-methods Methods for Function 'orthographic' in Package 'dcemri'
orthographic.nifti Methods for Function 'orthographic' in Package 'dcemri'
overlay Methods for Function overlay
overlay,anlz,anlz-method Methods for Function overlay
overlay,anlz,array-method Methods for Function overlay
overlay,anlz,nifti-method Methods for Function overlay
overlay,array,anlz-method Methods for Function overlay
overlay,array,array-method Methods for Function overlay
overlay,array,nifti-method Methods for Function overlay
overlay,nifti,anlz-method Methods for Function overlay
overlay,nifti,array-method Methods for Function overlay
overlay,nifti,nifti-method Methods for Function overlay
overlay-methods Methods for Function overlay
overlay.nifti Methods for Function overlay

-- P --

performPermutation performPermutation

-- Q --

quaternion2rotation Convert Quaternion into a Rotation Matrix

-- R --

read.analyze.content readANALYZE
read.nifti.content readNIfTI
readANALYZE readANALYZE
readNIfTI readNIfTI
reorient reorient

-- S --

show,anlz-method Class "anlz"
show,nifti-method Class "nifti"
space.time2xyzt Bitwise Conversion Subroutines

-- T --

tim.colors Tim's Useful Color Table
translateCoordinate translateCoordinate

-- W --

writeANALYZE writeANALYZE
writeNIfTI writeNIfTI

-- X --

xyzt2space Bitwise Conversion Subroutines
xyzt2time Bitwise Conversion Subroutines

-- misc --

[<-,ANY,ANY,ANY,ANY-method ~~ Methods for Function [<- in Package 'base' ~~
[<-,nifti,ANY,ANY,ANY-method ~~ Methods for Function [<- in Package 'base' ~~
[<-,nifti,ANY,missing,ANY-method ~~ Methods for Function [<- in Package 'base' ~~
[<-,nifti,missing,missing,array-method ~~ Methods for Function [<- in Package 'base' ~~
[<-,nifti,numeric,missing,ANY-method ~~ Methods for Function [<- in Package 'base' ~~
[<-,nifti,numeric,numeric,ANY-method ~~ Methods for Function [<- in Package 'base' ~~
[<--methods ~~ Methods for Function [<- in Package 'base' ~~