B C D F G H I L M N O P R S U V W Y misc
unmarked-package | Models for Data from Unmarked Animals |
backTransform | Methods for Function backTransform in Package 'unmarked' |
backTransform,unmarkedEstimate-method | Methods for Function backTransform in Package 'unmarked' |
backTransform,unmarkedFit-method | Methods for Function backTransform in Package 'unmarked' |
backTransform,unmarkedLinComb-method | Methods for Function backTransform in Package 'unmarked' |
backTransform-methods | Methods for Function backTransform in Package 'unmarked' |
birds | BBS Point Count and Occurrence Data from 2 Bird Species |
catbird | BBS Point Count and Occurrence Data from 2 Bird Species |
catbird.bin | BBS Point Count and Occurrence Data from 2 Bird Species |
coef,linCombOrBackTrans-method | Methods for Function coef in Package 'unmarked' |
coef,unmarkedEstimate-method | Methods for Function coef in Package 'unmarked' |
coef,unmarkedFit-method | Methods for Function coef in Package 'unmarked' |
coef,unmarkedModSel-method | Model selection results from an unmarkedFitList |
coef-methods | Methods for Function coef in Package 'unmarked' |
colext | Fit the colonization-extinction model. |
confint,unmarkedBackTrans-method | Methods for Function confint in Package 'unmarked' |
confint,unmarkedEstimate-method | Methods for Function confint in Package 'unmarked' |
confint,unmarkedFit-method | Methods for Function confint in Package 'unmarked' |
confint,unmarkedLinComb-method | Methods for Function confint in Package 'unmarked' |
confint-methods | Methods for Function confint in Package 'unmarked' |
coordinates | Class "unmarkedFrame" |
coordinates,unmarkedFrame-method | Class "unmarkedFrame" |
coords | Class "unmarkedFrame" |
csvToUMF | Convert .CSV File to an unmarkedFrame |
detFuns | Distance-sampling detection functions and associated density functions |
distsamp | Fit the hierarchical distance sampling model of Royle et al. (2004) |
doublePiFun | Compute multinomial cell probabilities |
drexp | Distance-sampling detection functions and associated density functions |
drhaz | Distance-sampling detection functions and associated density functions |
drhn | Distance-sampling detection functions and associated density functions |
dxexp | Distance-sampling detection functions and associated density functions |
dxhaz | Distance-sampling detection functions and associated density functions |
dxhn | Distance-sampling detection functions and associated density functions |
fitList | constructor of unmarkedFitList objects |
fitted,unmarkedFit-method | Methods for Function fitted in Package 'unmarked' |
fitted,unmarkedFitColExt-method | Methods for Function fitted in Package 'unmarked' |
fitted,unmarkedFitDS-method | Methods for Function fitted in Package 'unmarked' |
fitted,unmarkedFitGMM-method | Methods for Function fitted in Package 'unmarked' |
fitted,unmarkedFitOccu-method | Methods for Function fitted in Package 'unmarked' |
fitted,unmarkedFitOccuRN-method | Methods for Function fitted in Package 'unmarked' |
fitted,unmarkedFitPCount-method | Methods for Function fitted in Package 'unmarked' |
fitted-methods | Methods for Function fitted in Package 'unmarked' |
formatDistData | Convert individual-level distance data to the transect-level format required by distsamp |
formatLong | Convert between wide and long data formats. |
formatMult | Create unmarkedMultFrame from Long Format Data Frame |
formatWide | Convert between wide and long data formats. |
frog2001pcru | 2001 Delaware North American Amphibian Monitoring Program Data |
frog2001pfer | 2001 Delaware North American Amphibian Monitoring Program Data |
frogs | 2001 Delaware North American Amphibian Monitoring Program Data |
getData | Class "unmarkedFit" |
getData,unmarkedFit-method | Class "unmarkedFit" |
getP | Methods for Function getP in Package 'unmarked' |
getP,unmarkedFit-method | Methods for Function getP in Package 'unmarked' |
getP,unmarkedFitColExt-method | Methods for Function getP in Package 'unmarked' |
getP,unmarkedFitDS-method | Methods for Function getP in Package 'unmarked' |
getP,unmarkedFitGMM-method | Methods for Function getP in Package 'unmarked' |
getP,unmarkedFitMPois-method | Methods for Function getP in Package 'unmarked' |
getP-methods | Methods for Function getP in Package 'unmarked' |
getY | Class "unmarkedFrame" |
getY,unmarkedFrame-method | Class "unmarkedFrame" |
gf | Green frog count index data |
gf.data | Green frog count index data |
gf.obs | Green frog count index data |
gmultmix | Generalized multinomial-mixture model |
gxexp | Distance-sampling detection functions and associated density functions |
gxhaz | Distance-sampling detection functions and associated density functions |
gxhn | Distance-sampling detection functions and associated density functions |
head,unmarkedFrame-method | Class "unmarkedFrame" |
hessian | Class "unmarkedFit" |
hessian,unmarkedFit-method | Class "unmarkedFit" |
hist,unmarkedFitDS-method | Class "unmarkedFit" |
hist,unmarkedFrameDS-method | Class "unmarkedFrame" |
imputeMissing | A function to impute missing entries in continuous obsCovs |
lambda2psi | Convert Poisson mean (lambda) to probability of occurrence (psi). |
linearComb | Methods for Function linearComb in Package 'unmarked' |
linearComb,unmarkedEstimate,matrixOrVector-method | Methods for Function linearComb in Package 'unmarked' |
linearComb,unmarkedFit,matrixOrVector-method | Methods for Function linearComb in Package 'unmarked' |
linearComb-methods | Methods for Function linearComb in Package 'unmarked' |
linetran | Simulated line transect data |
logLik | Class "unmarkedFit" |
logLik,unmarkedFit-method | Class "unmarkedFit" |
LRT | Class "unmarkedFit" |
LRT,unmarkedFit,unmarkedFit-method | Class "unmarkedFit" |
mallard | Mallard count data |
mallard.obs | Mallard count data |
mallard.site | Mallard count data |
mallard.y | Mallard count data |
mapInfo | Class "unmarkedFrame" |
masspcru | Massachusetts North American Amphibian Monitoring Program Data |
mle | Class "unmarkedFit" |
mle,unmarkedFit-method | Class "unmarkedFit" |
modSel | Model selection results from an unmarkedFitList |
modSel,unmarkedFitList-method | Class "unmarkedFitList" |
modSel-methods | Model selection results from an unmarkedFitList |
multinomPois | Multinomial-Poisson Mixtures |
names,unmarkedEstimateList-method | Class "unmarkedEstimateList" |
names,unmarkedFit-method | Class "unmarkedFit" |
nllFun | Class "unmarkedFit" |
nllFun,unmarkedFit-method | Class "unmarkedFit" |
nonparboot | Nonparametric bootstrapping in unmarked |
nonparboot,unmarkedFit-method | Nonparametric bootstrapping in unmarked |
nonparboot,unmarkedFitColExt-method | Nonparametric bootstrapping in unmarked |
nonparboot,unmarkedFitDS-method | Nonparametric bootstrapping in unmarked |
nonparboot,unmarkedFitMPois-method | Nonparametric bootstrapping in unmarked |
nonparboot,unmarkedFitOccu-method | Nonparametric bootstrapping in unmarked |
nonparboot,unmarkedFitOccuRN-method | Nonparametric bootstrapping in unmarked |
nonparboot,unmarkedFitPCount-method | Nonparametric bootstrapping in unmarked |
nonparboot-methods | Nonparametric bootstrapping in unmarked |
numSites | Class "unmarkedFrame" |
numSites,unmarkedFrame-method | Class "unmarkedFrame" |
numY | Class "unmarkedFrame" |
numY,unmarkedFrame-method | Class "unmarkedFrame" |
obsCovs | Class "unmarkedFrame" |
obsCovs,unmarkedFrame-method | Class "unmarkedFrame" |
obsCovs<- | Class "unmarkedFrame" |
obsCovs<-,unmarkedFrame-method | Class "unmarkedFrame" |
obsNum | Class "unmarkedFrame" |
obsNum,unmarkedFrame-method | Class "unmarkedFrame" |
obsToY | Class "unmarkedFrame" |
obsToY,unmarkedFrame-method | Class "unmarkedFrame" |
obsToY<- | Class "unmarkedFrame" |
obsToY<-,unmarkedFrame-method | Class "unmarkedFrame" |
occu | Fit the MacKenzie Occupancy Model |
occuRN | Fit the Occupancy model of Royle and Nichols... |
ovendata | Removal data for the Ovenbird |
ovendata.list | Removal data for the Ovenbird |
parboot | Parametric bootstrap method for fitted models inheriting class. |
parboot,unmarkedFit-method | Class "unmarkedFit" |
pcount | Fit the N-mixture point count model... |
pcru.bin | 2001 Delaware North American Amphibian Monitoring Program Data |
pcru.data | 2001 Delaware North American Amphibian Monitoring Program Data |
pcru.y | 2001 Delaware North American Amphibian Monitoring Program Data |
pfer.bin | 2001 Delaware North American Amphibian Monitoring Program Data |
pfer.data | 2001 Delaware North American Amphibian Monitoring Program Data |
pfer.y | 2001 Delaware North American Amphibian Monitoring Program Data |
piFuns | Compute multinomial cell probabilities |
plot,parboot,missing-method | Parametric bootstrap method for fitted models inheriting class. |
plot,profile,missing-method | Class "unmarkedFit" |
plot,unmarkedFit,missing-method | Class "unmarkedFit" |
plot,unmarkedFrame,missing-method | Class "unmarkedFrame" |
pointtran | Simulated point-transect data |
powerAnalysis | Class "unmarkedFrame" |
powerAnalysis,formula,unmarkedFramePCount,numeric-method | Class "unmarkedFrame" |
predict,unmarkedFit-method | Class "unmarkedFit" |
predict,unmarkedFitColExt-method | Class "unmarkedFit" |
predict,unmarkedFitGMM-method | Class "unmarkedFit" |
predict,unmarkedFitList-method | Class "unmarkedFitList" |
profile,unmarkedFit-method | Class "unmarkedFit" |
projected | Class "unmarkedFit" |
projected,unmarkedFitColExt-method | Class "unmarkedFit" |
projection | Class "unmarkedFrame" |
projection,unmarkedFrame-method | Class "unmarkedFrame" |
removalPiFun | Compute multinomial cell probabilities |
residuals,unmarkedFit-method | Class "unmarkedFit" |
residuals,unmarkedFitOccu-method | Class "unmarkedFit" |
residuals,unmarkedFitOccuRN-method | Class "unmarkedFit" |
sampleSize | Class "unmarkedFit" |
sampleSize,unmarkedFit-method | Class "unmarkedFit" |
SE | Methods for Function SE in Package 'unmarked' |
SE,linCombOrBackTrans-method | Methods for Function SE in Package 'unmarked' |
SE,unmarkedEstimate-method | Methods for Function SE in Package 'unmarked' |
SE,unmarkedFit-method | Methods for Function SE in Package 'unmarked' |
SE,unmarkedModSel-method | Model selection results from an unmarkedFitList |
SE-methods | Methods for Function SE in Package 'unmarked' |
show,parboot-method | Parametric bootstrap method for fitted models inheriting class. |
show,unmarkedBackTrans-method | Methods for Function backTransform in Package 'unmarked' |
show,unmarkedEstimate-method | Class "unmarkedEstimate" |
show,unmarkedEstimateList-method | Class "unmarkedEstimateList" |
show,unmarkedFit-method | Class "unmarkedFit" |
show,unmarkedFrame-method | Class "unmarkedFrame" |
show,unmarkedLinComb-method | Methods for Function linearComb in Package 'unmarked' |
show,unmarkedModSel-method | Model selection results from an unmarkedFitList |
show,unmarkedMultFrame-method | Class "unmarkedFrame" |
sight2perpdist | Convert sight distance and sight angle to perpendicular distance. |
simulate,unmarkedFitColExt-method | Methods for Function simulate in Package 'unmarked' |
simulate,unmarkedFitDS-method | Methods for Function simulate in Package 'unmarked' |
simulate,unmarkedFitGMM-method | Methods for Function simulate in Package 'unmarked' |
simulate,unmarkedFitMPois-method | Methods for Function simulate in Package 'unmarked' |
simulate,unmarkedFitOccu-method | Methods for Function simulate in Package 'unmarked' |
simulate,unmarkedFitOccuRN-method | Methods for Function simulate in Package 'unmarked' |
simulate,unmarkedFitPCount-method | Methods for Function simulate in Package 'unmarked' |
simulate-methods | Methods for Function simulate in Package 'unmarked' |
siteCovs | Class "unmarkedFrame" |
siteCovs,unmarkedFrame-method | Class "unmarkedFrame" |
siteCovs<- | Class "unmarkedFrame" |
siteCovs<-,unmarkedFrame-method | Class "unmarkedFrame" |
smoothed | Class "unmarkedFit" |
smoothed,unmarkedFitColExt-method | Class "unmarkedFit" |
SSE | Compute Sum of Squared Residuals for a Model Fit. |
summary,unmarkedEstimate-method | Class "unmarkedEstimate" |
summary,unmarkedEstimateList-method | Class "unmarkedEstimateList" |
summary,unmarkedFit-method | Class "unmarkedFit" |
summary,unmarkedFitDS-method | Class "unmarkedFit" |
summary,unmarkedFitList-method | Class "unmarkedFitList" |
summary,unmarkedFrame-method | Class "unmarkedFrame" |
summary,unmarkedFrameDS-method | Class "unmarkedFrame" |
summary,unmarkedModSel-method | Model selection results from an unmarkedFitList |
summary,unmarkedMultFrame-method | Class "unmarkedFrame" |
unmarked | Models for Data from Unmarked Animals |
unmarkedEstimate | Class "unmarkedEstimate" |
unmarkedEstimate-class | Class "unmarkedEstimate" |
unmarkedEstimateList-class | Class "unmarkedEstimateList" |
unmarkedFit | Class "unmarkedFit" |
unmarkedFit-class | Class "unmarkedFit" |
unmarkedFitDS-class | Class "unmarkedFit" |
unmarkedFitGMM-class | Class "unmarkedFit" |
unmarkedFitList-class | Class "unmarkedFitList" |
unmarkedFitMPois-class | Class "unmarkedFit" |
unmarkedFitOccu-class | Class "unmarkedFit" |
unmarkedFitPCount-class | Class "unmarkedFit" |
unmarkedFrame | Create an unmarkedFrame, or one of its child classes. |
unmarkedFrame-class | Class "unmarkedFrame" |
unmarkedFrameDS | Create an unmarkedFrame, or one of its child classes. |
unmarkedFrameDS-class | Class "unmarkedFrame" |
unmarkedFrameGMM | Create an unmarkedMultFrame or an unmarkedFrameGMM. |
unmarkedFrameGMM-class | Class "unmarkedFrame" |
unmarkedFrameMPois | Create an unmarkedFrame, or one of its child classes. |
unmarkedFrameMPois-class | Class "unmarkedFrame" |
unmarkedFrameOccu | Create an unmarkedFrame, or one of its child classes. |
unmarkedFrameOccu-class | Class "unmarkedFrame" |
unmarkedFramePCount | Create an unmarkedFrame, or one of its child classes. |
unmarkedFramePCount-class | Class "unmarkedFrame" |
unmarkedModSel-class | Model selection results from an unmarkedFitList |
unmarkedMultFrame | Create an unmarkedMultFrame or an unmarkedFrameGMM. |
unmarkedMultFrame-class | Class "unmarkedFrame" |
update,unmarkedFit-method | Class "unmarkedFit" |
update,unmarkedFitColExt-method | Class "unmarkedFit" |
update,unmarkedFitGMM-method | Class "unmarkedFit" |
vcov,linCombOrBackTrans-method | Methods for Function vcov in Package 'unmarked' |
vcov,unmarkedEstimate-method | Methods for Function vcov in Package 'unmarked' |
vcov,unmarkedFit-method | Methods for Function vcov in Package 'unmarked' |
vcov-methods | Methods for Function vcov in Package 'unmarked' |
woodthrush | BBS Point Count and Occurrence Data from 2 Bird Species |
woodthrush.bin | BBS Point Count and Occurrence Data from 2 Bird Species |
yearlySiteCovs | Create an unmarkedMultFrame or an unmarkedFrameGMM. |
yearlySiteCovs,unmarkedMultFrame-method | Create an unmarkedMultFrame or an unmarkedFrameGMM. |
yearlySiteCovs<- | Create an unmarkedMultFrame or an unmarkedFrameGMM. |
yearlySiteCovs<-,unmarkedMultFrame-method | Create an unmarkedMultFrame or an unmarkedFrameGMM. |
[,unmarkedEstimateList,ANY,ANY,ANY-method | Methods for bracket extraction [ in Package 'unmarked' |
[,unmarkedFit,ANY,ANY,ANY-method | Methods for bracket extraction [ in Package 'unmarked' |
[,unmarkedFrame,list,missing,missing-method | Methods for bracket extraction [ in Package 'unmarked' |
[,unmarkedFrame,missing,numeric,missing-method | Methods for bracket extraction [ in Package 'unmarked' |
[,unmarkedFrame,numeric,missing,missing-method | Methods for bracket extraction [ in Package 'unmarked' |
[,unmarkedFrame,numeric,numeric,missing-method | Methods for bracket extraction [ in Package 'unmarked' |
[,unmarkedMultFrame,missing,numeric,missing-method | Methods for bracket extraction [ in Package 'unmarked' |
[-methods | Methods for bracket extraction [ in Package 'unmarked' |