Multivariate Autoregressive State-Space Modeling


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Documentation for package ‘MARSS’ version 1.1

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MARSS-package Multivariate Autoregressive State-Space Model Estimation
alldefaults MARSS function defaults and allowed methods
allowed MARSS function defaults and allowed methods
allowed.methods MARSS function defaults and allowed methods
as.design Matrix Utilities
as.marssm Model Objects
checkPopWrap Check Arguments to popWrap()
CSEGriskfigure Plot Extinction Risk Metrics
CSEGtmufigure Plot Forecast Uncertainty
describe.marssm MARSS function defaults and allowed methods
find.degenerate Find degenerate variance parameters
graywhales Population Data Sets
grouse Population Data Sets
harborSeal Harbor Seal Population Count Data (Log counts)
harborSealnomiss Harbor Seal Population Count Data (Log counts)
harborSealWA Harbor Seal Population Count Data (Log counts)
Imat Matrix Utilities
is.blockdiag Matrix Utilities
is.blockequaltri Matrix Utilities
is.blockunconst Matrix Utilities
is.design Matrix Utilities
is.diagonal Matrix Utilities
is.equaltri Matrix Utilities
is.fixed Matrix Utilities
is.identity Matrix Utilities
is.marssm Model Objects
is.marssMLE Maximum Likelihood MARSS Estimation Object
is.wholenumber Matrix Utilities
isleRoyal Population Data Sets
ivesDataLP Plankton Data Sets
kem.methods MARSS function defaults and allowed methods
lakeWAplankton Plankton Data Sets
loggerhead Loggerhead Turtle Tracking Data
loggerheadNoisy Loggerhead Turtle Tracking Data
makediag Matrix Utilities
MARSS Interface MARSS Model Specification and Estimation
MARSSaic AIC for MARSS models
MARSSapplynames Names for marssMLE Object Components
MARSSboot Bootstrap MARSS Parameter Estimates
MARSScheckdims MARSS Utilities
MARSScheckpar MARSS Utilities
MARSShessian MARSS Parameter Variance-Covariance Matrix from the Hessian Matrix
MARSSinits Initial Values for MLE
MARSSinnovationsboot Bootstrapped Data using Stoffer and Wall's Algorithm
MARSSkem Maximum Likelihood Estimation for Multivariate Autoregressive State-Space Models
MARSSkemcheck Model Checking for MLE objects passed to MARSSkem
MARSSkf Kalman Filtering and Smoothing
MARSSLLprofile Log-likelihood profiles for MARSS Parameters
marssm Model Objects
marssm-class Class "marssm"
MARSSmcinit Monte Carlo Initialization
marssMLE Maximum Likelihood MARSS Estimation Object
marssMLE-class Class "marssMLE"
MARSSoptim Parameter estimation for MARSS models using optim
MARSSoptions Change MARSS Defaults Utility
MARSSparamCIs Confidence Intervals for MARSS Parameters
MARSSsettings Interface MARSS Model Specification and Estimation
MARSSsimulate Simulate Data from a MARSS Model and Parameter Estimates
MARSSvectorizeparam Vector to Parameter Matrix Conversion
model.elem MARSS function defaults and allowed methods
model.elem.w.V0 MARSS function defaults and allowed methods
neglogLik Parameter estimation for MARSS models using optim
optim.methods MARSS function defaults and allowed methods
popWrap Wrapper Objects
popWrap-class Class "popWrap"
prairiechicken Population Data Sets
print-method Class "marssMLE"
print-method Class "marssm"
show.doc Documentation Utility
stdInnov Standardized Innovations
summary-method Class "marssMLE"
summary-method Class "marssm"
takediag Matrix Utilities
unvec Matrix Utilities
vec Matrix Utilities
wilddogs Population Data Sets