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| TreePar-package | Estimating diversification rate changes and mass extinction events in phylogenies |
| bd.densdep.optim | bd.densdep.optim: Estimating speciation and extinction rates in phylogenies under a density-dependent speciation model |
| bd.shifts.optim | bd.shifts.optim: Estimating speciation and extinction rate changes and mass extinction events in phylogenies |
| TreePar | Estimating diversification rate changes and mass extinction events in phylogenies |