* using log directory 'd:/Rcompile/CRANpkg/local/2.11/Design.Rcheck' * using R version 2.11.1 Patched (2010-07-29 r52657) * using session charset: ISO8859-1 * checking for file 'Design/DESCRIPTION' ... OK * this is package 'Design' version '2.3-0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'Design' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Design: possible error in eval(as.name(XDATADIST), local = FALSE): unused argument(s) (local = FALSE) Getlim: possible error in eval(as.name(XDATADIST), local = FALSE): unused argument(s) (local = FALSE) Mean.cph: multiple local function definitions for 'f' with different formal arguments bj: no visible binding for global variable 'glm.links' bootcov: no visible global function definition for 'origGlmFamily' bootcov: no visible global function definition for 'RqFit' calibrate.cph: no visible binding for global variable 'pred.obs' calibrate.default: no visible binding for global variable '.orig.cal' calibrate.psm: no visible binding for global variable 'survReg.distributions' calibrate.psm: no visible binding for global variable 'glm.links' calibrate.psm: no visible binding for global variable 'pred.obs' cph: possible error in eval(yy, data = data): unused argument(s) (data = data) datadist: possible error in eval(as.name(nm), local = FALSE): unused argument(s) (local = FALSE) datadist: no visible global function definition for 'database.object' gendata.Design: no visible global function definition for 'using.X' gendata.Design: no visible global function definition for 'ed' gendata.Design: possible error in assign(".df.sub.", df.sub, where = 1): unused argument(s) (where = 1) gendata.Design: no visible global function definition for 'Edit.data' gendata.Design: no visible binding for global variable '.df.sub.' gendata.Design: possible error in get(".df.sub.", where = 1): unused argument(s) (where = 1) gendata.Design: no visible global function definition for 'data.ed' gendata.default: no visible binding for global variable 'obj' glsD: no visible binding for global variable 'aNlm' glsD: no visible global function definition for 'glsApVar' latex.pphsm: no visible binding for global variable 'f' lrm: no visible binding for global variable 'response' lrm: possible error in lrm.fit.strat(X, Y, Strata, offset = offs, penalty.matrix = penalty.matrix, strata.penalty = strata.penalty, tol = tol, weights = weights, normwt = normwt, ...): unused argument(s) (weights = weights, normwt = normwt) lrm: possible error in lrm.fit.strat(X, Y, Strata, penalty.matrix = penalty.matrix, strata.penalty = strata.penalty, tol = tol, weights = weights, normwt = normwt, ...): unused argument(s) (weights = weights, normwt = normwt) oldDesignFit2R: no visible binding for global variable 'linear.predictors' oldDesignFit2R: no visible binding for global variable 'stats' oldDesignFit2R: no visible binding for global variable 'freq' ols: no visible binding for global variable 'response' ols.influence: no visible global function definition for 'left.solve' pentrace: no visible global function definition for 'nlminb.control' print.lrm: no visible binding for global variable 'est.exp' print.psm: no visible binding for global variable 'survReg.distributions' print.psm: no visible global function definition for 'summary.survReg' print.psm: no visible global function definition for 'print.summary.survreg' psm: no visible global function definition for 'survReg.control' psm: no visible binding for global variable 'survReg.distributions' psm: no visible global function definition for 'survpenal.fit' psm: no visible global function definition for 'survReg.fit' residuals.psm: no visible global function definition for 'residuals.survReg' residuals.psm: no visible global function definition for 'residuals.survreg' survest.psm: no visible binding for global variable 'survReg.distributions' survest.psm: no visible binding for global variable 'glm.links' survplot.Design: no visible global function definition for 'oldCut' survreg.fit2: no visible binding for global variable 'survReg.distributions' survreg.fit2: no visible global function definition for 'survReg.fit' survreg.fit2: no visible global function definition for 'survReg.control' val.prob: possible error in legend(lp, leg, lty = lt, marks = marks, mkh = mkh, cex = cex, bty = "n"): unused argument(s) (marks = marks, mkh = mkh) val.prob: no visible global function definition for 'oldCut' val.surv: no visible binding for global variable 'survReg.distributions' val.surv: no visible binding for global variable 'glm.links' validate.psm: no visible binding for global variable 'inverse' validate.tree: no visible binding for global variable 'response' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... WARNING Argument items with no description in Rd object 'Design.trans': x1 Argument items with no description in Rd object 'bj': data subset B bw rule sls aics pr tol rel.tolerance Argument items with no description in Rd object 'calibrate': method B bw rule type sls xlim Argument items with no description in Rd object 'glmD': formula family data weights subset na.action start offset control model method x y Argument items with no description in Rd object 'latex.cph': file which varnames columns inline before dec Argument items with no description in Rd object 'nomogram': x Argument items with no description in Rd object 'plot.Design': theta phi Argument items with no description in Rd object 'psm': data subset weights dist scale init na.action Argument items with no description in Rd object 'survfit.cph': newdata se.fit conf.int individual type vartype Argument items with no description in Rd object 'survfit.formula': conf.type Argument items with no description in Rd object 'validate.cph': rel.tolerance maxiter tol Argument items with no description in Rd object 'validate.lrm': method B bw rule type sls aics Argument items with no description in Rd object 'validate.ols': method B bw rule type sls aics * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * checking examples ... OK * checking PDF version of manual ... OK