* using log directory 'd:/Rcompile/CRANpkg/local/2.11/RandForestGUI.Rcheck' * using R version 2.11.1 Patched (2010-07-29 r52657) * using session charset: ISO8859-1 * checking for file 'RandForestGUI/DESCRIPTION' ... OK * this is package 'RandForestGUI' version '1.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'RandForestGUI' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Davies_Bouldin_URF : calc: no visible binding for global variable 'mat.analyse.RF' Davies_Bouldin_URF : calc: no visible binding for global variable 'URF_mean' Davies_Bouldin_URF : calc: no visible binding for '<<-' assignment to 'DB_index' Davies_Bouldin_URF : plott: no visible binding for global variable 'DB_index' Davies_Bouldin_URF: no visible binding for '<<-' assignment to 'nff1' Davies_Bouldin_URF: no visible binding for global variable 'nf' Davies_Bouldin_URF: no visible binding for global variable 'nff1' MDA.RF : temp: no visible binding for '<<-' assignment to 'cond' MDA.RF : temp: no visible binding for global variable 'nf' MDA.RF : temp: no visible binding for '<<-' assignment to 'MDA_conditional' MDA.RF : temp: no visible binding for global variable 'cond' MDA.RF : temp: no visible binding for global variable 'filename.RF' MDA.RF : temp: no visible binding for global variable 'SRF_ini' MDA.RF : temp: no visible binding for global variable 'mat.analyse.RF' MDA.RF : temp: no visible binding for global variable 'MDA_conditional' MDA.RF : temp: no visible binding for '<<-' assignment to 'SRF_ini_myvarimp_selected' MDA.RF: no visible binding for global variable 'nf' MDA.RF: no visible binding for global variable 'SRF_ini_myvarimp' MDA.RF: no visible binding for global variable 'MDA_conditional' OOB.RF: no visible binding for global variable 'SRF_ini_dat' OOB.RF: no visible binding for global variable 'SRF_ini' OOB.RF: no visible binding for '<<-' assignment to 'SRF_ini_OOB' OOB.RF.fitted: no visible binding for global variable 'SRF_ini_dat_fitted' OOB.RF.fitted: no visible binding for global variable 'SRF_ini_fitted' OOB.RF.fitted: no visible binding for '<<-' assignment to 'SRF_ini_OOB_fitted' RISA2RF.RF : RISA2RF.RF_temp: no visible binding for '<<-' assignment to 'none' RISA2RF.RF : RISA2RF.RF_temp: no visible binding for '<<-' assignment to 'aaa' RISA2RF.RF : RISA2RF.RF_temp: no visible binding for global variable 'aaa' RISA2RF.RF : RISA2RF.RF_temp : ess: no visible binding for global variable 'aaa' RISA2RF.RF : RISA2RF.RF_temp : ess: no visible binding for '<<-' assignment to 'mat.analyse.RF.init' RISA2RF.RF : RISA2RF.RF_temp : ess: no visible binding for global variable 'nb' RISA2RF.RF : importGUI3 : mm: no visible binding for '<<-' assignment to 'mat.analyse.RF.init' RISA2RF.RF : importGUI3 : mm: no visible binding for '<<-' assignment to 'mat.analyse.RF' RISA2RF.RF: no visible binding for global variable 'nf' RandForestGUI: no visible binding for '<<-' assignment to 'colo_fig_par' RandForestGUI: no visible binding for global variable 'curlang' RandForestGUI: no visible binding for global variable 'mem_lim' SRF.fin.tune.mtryGUI : temp : bestmtry: no visible binding for global variable 'mat.analyse.RF.fitted' SRF.fin.tune.mtryGUI : temp : bestmtry: no visible binding for global variable 'SRF_fin_tunemtry_inc' SRF.fin.tune.mtryGUI : temp : bestmtry: no visible binding for '<<-' assignment to 'dat' SRF.fin.tune.mtryGUI : temp : bestmtry: no visible binding for global variable 'fact.temp' SRF.fin.tune.mtryGUI : temp : bestmtry: no visible binding for '<<-' assignment to 'fff' SRF.fin.tune.mtryGUI : temp : bestmtry: no visible binding for global variable 'fff' SRF.fin.tune.mtryGUI : temp : bestmtry: no visible binding for global variable 'SRF_fit_tunemtry_nbforest' SRF.fin.tune.mtryGUI : temp : bestmtry: no visible binding for global variable 'SRF_fin_tunemtry_nbtree' SRF.fin.tune.mtryGUI : temp : bestmtry: no visible binding for global variable 'dat' SRF.fin.tune.mtryGUI : temp: no visible binding for global variable 'fact.RF' SRF.fin.tune.mtryGUI : temp: no visible binding for '<<-' assignment to 'fact.temp' SRF.fin.tune.mtryGUI : temp: no visible binding for global variable 'nf' SRF.fin.tune.mtryGUI : temp: no visible binding for '<<-' assignment to 'SRF_fit_tunemtry_nbforest' SRF.fin.tune.mtryGUI : temp: no visible binding for '<<-' assignment to 'nbtree.temp' SRF.fin.tune.mtryGUI : temp: no visible binding for '<<-' assignment to 'SRF_fin_tunemtry_nbtree' SRF.fin.tune.mtryGUI : temp: no visible binding for global variable 'nbtree.temp' SRF.fin.tune.mtryGUI : temp: no visible binding for '<<-' assignment to 'SRF_fin_tunemtry_inc' SRF.fin.tune.mtryGUI : temp: no visible binding for global variable 'mat.analyse.RF.fitted' SRF.fin.tune.mtryGUI : temp: no visible binding for global variable 'SRF_fin_tunemtry_inc' SRF.fin.tune.mtryGUI : temp: no visible binding for global variable 'SRF_fit_tunemtry_nbforest' SRF.fin.tune.mtryGUI : temp: no visible binding for '<<-' assignment to 'fff' SRF.fin.tune.mtryGUI : temp: no visible binding for '<<-' assignment to 'SRF_fit_tunemtry_restree' SRF.fin.tune.mtryGUI: no visible binding for global variable 'nf' SRF.fin.tune.mtryGUI: no visible binding for global variable 'SRF_ini_mtry_fitted' SRF.fin.tune.mtryGUI: no visible binding for global variable 'mat.analyse.RF.fitted' SRF.tune.mtryGUI : temp : bestmtry: no visible binding for global variable 'mat.analyse.RF' SRF.tune.mtryGUI : temp : bestmtry: no visible binding for global variable 'SRF_ini_tunemtry_inc' SRF.tune.mtryGUI : temp : bestmtry: no visible binding for '<<-' assignment to 'dat' SRF.tune.mtryGUI : temp : bestmtry: no visible binding for global variable 'fact.temp' SRF.tune.mtryGUI : temp : bestmtry: no visible binding for '<<-' assignment to 'fff' SRF.tune.mtryGUI : temp : bestmtry: no visible binding for global variable 'fff' SRF.tune.mtryGUI : temp : bestmtry: no visible binding for global variable 'SRF_ini_tunemtry_nbforest' SRF.tune.mtryGUI : temp : bestmtry: no visible binding for global variable 'SRF_ini_tunemtry_nbtree' SRF.tune.mtryGUI : temp : bestmtry: no visible binding for global variable 'dat' SRF.tune.mtryGUI : temp: no visible binding for global variable 'fact.RF' SRF.tune.mtryGUI : temp: no visible binding for '<<-' assignment to 'fact.temp' SRF.tune.mtryGUI : temp: no visible binding for global variable 'nf' SRF.tune.mtryGUI : temp: no visible binding for '<<-' assignment to 'SRF_ini_tunemtry_nbforest' SRF.tune.mtryGUI : temp: no visible binding for '<<-' assignment to 'nbtree.temp' SRF.tune.mtryGUI : temp: no visible binding for '<<-' assignment to 'SRF_ini_tunemtry_nbtree' SRF.tune.mtryGUI : temp: no visible binding for global variable 'nbtree.temp' SRF.tune.mtryGUI : temp: no visible binding for '<<-' assignment to 'SRF_ini_tunemtry_inc' SRF.tune.mtryGUI : temp: no visible binding for global variable 'mat.analyse.RF' SRF.tune.mtryGUI : temp: no visible binding for global variable 'SRF_ini_tunemtry_inc' SRF.tune.mtryGUI : temp: no visible binding for global variable 'SRF_ini_tunemtry_nbforest' SRF.tune.mtryGUI : temp: no visible binding for '<<-' assignment to 'fff' SRF.tune.mtryGUI : temp: no visible binding for '<<-' assignment to 'SRF_ini_tunemtry_restree' SRF.tune.mtryGUI: no visible binding for global variable 'nf' SRF.tune.mtryGUI: no visible binding for global variable 'SRF_ini_mtry' SRF.tune.mtryGUI: no visible binding for global variable 'mat.analyse.RF' SRF_fitted_rpart: no visible binding for global variable 'fact.RF' SRF_fitted_rpart: no visible binding for global variable 'nf' SRF_fitted_rpart: no visible binding for '<<-' assignment to 'ctree_fitted_pval' SRF_fitted_rpart : temp: no visible binding for global variable 'mat.analyse.RF.fitted' SRF_fitted_rpart : temp: no visible binding for global variable 'fact.RF' SRF_fitted_rpart : temp: no visible binding for global variable 'ctree_fitted_pval' SRF_init_VarImp: no visible binding for '<<-' assignment to 'af' SRF_init_VarImp : go: no visible binding for '<<-' assignment to 'pval.threshold' SRF_init_VarImp : go: no visible binding for global variable 'nf' SRF_init_VarImp : go: no visible binding for '<<-' assignment to 'inf' SRF_init_VarImp : go: no visible binding for global variable 'pval.init' SRF_init_VarImp : go: no visible binding for global variable 'pval.threshold' SRF_init_VarImp : go: no visible binding for global variable 'inf' SRF_init_VarImp : go: no visible binding for '<<-' assignment to 'af' SRF_init_VarImp : go: no visible binding for global variable 'af' SRF_init_VarImp: no visible binding for global variable 'af' SRF_init_VarImp: no visible binding for global variable 'inf' SRF_init_VarImp: no visible binding for global variable 'mat.analyse.RF' SRF_init_VarImp: no visible binding for '<<-' assignment to 'mat.analyse.RF' SRF_init_rpart: no visible binding for global variable 'fact.RF' SRF_init_rpart: no visible binding for global variable 'nf' SRF_init_rpart: no visible binding for '<<-' assignment to 'ctree_ini_pval' SRF_init_rpart: no visible binding for global variable 'mat.analyse.RF' SRF_init_rpart: no visible binding for global variable 'ctree_ini_pval' URF_tune_mtry : URF_tune_mtry_temp: no visible binding for global variable 'mat.analyse.RF' URF_tune_mtry : URF_tune_mtry_temp: no visible binding for global variable 'nf' URF_tune_mtry : URF_tune_mtry_temp: no visible binding for '<<-' assignment to 'URF_tune_mtry_incr' URF_tune_mtry : URF_tune_mtry_temp: no visible binding for '<<-' assignment to 'URF_tune_mtry_forest' URF_tune_mtry : URF_tune_mtry_temp: no visible binding for '<<-' assignment to 'URF_tune_mtry_nbtree' URF_tune_mtry : URF_tune_mtry_temp: no visible binding for global variable 'URF_meth' URF_tune_mtry : URF_tune_mtry_temp: no visible binding for global variable 'tt' URF_tune_mtry : URF_tune_mtry_temp: no visible binding for global variable 'nb' URF_tune_mtry : plot_tune_mtry: no visible binding for global variable 'URF_mtry' URF_tune_mtry: no visible binding for global variable 'nf' choiceGUI: no visible binding for global variable 'nf' choicefactGUI: no visible binding for global variable 'nf' cluster_det_URF: no visible binding for global variable 'DB_index' cluster_det_URF: no visible binding for '<<-' assignment to 'cluster_algo' cluster_det_URF: no visible binding for global variable 'nf' cluster_det_URF: no visible binding for global variable 'cluster_algo' cluster_det_URF: no visible binding for '<<-' assignment to 'nb_clust_URF' cluster_det_URF: no visible binding for '<<-' assignment to 'factt' cluster_det_URF: no visible binding for '<<-' assignment to 'clust_URF' cluster_det_URF: no visible binding for global variable 'URF_mean' cluster_det_URF: no visible binding for global variable 'nb_clust_URF' cluster_det_URF: no visible binding for global variable 'URF_mds' cluster_det_URF: no visible binding for global variable 'clust_URF' cluster_det_URF: no visible binding for global variable 'factt' cluster_det_URF: no visible binding for global variable 'tt' cluster_det_URF: no visible binding for global variable 'nb' correlation.RF.init.vs.fitted: no visible binding for global variable 'SRF.init.prox.raw' correlation.RF.init.vs.fitted: no visible binding for global variable 'SRF.fitted.prox.raw' correlation.RF.init.vs.fitted: no visible binding for global variable 'mat.analyse.RF' correlation.RF.init.vs.fitted: no visible binding for global variable 'mat.analyse.RF.fitted' correlation.RF.init.vs.fitted: no visible binding for '<<-' assignment to 'correlation' diversity.calc.RF : diversity.calc: no visible binding for global variable 'mat.analyse.RF' diversity.calc.RF: no visible binding for global variable 'nf' fig_par: no visible binding for global variable 'nf' fig_par: no visible binding for '<<-' assignment to 'colo_fig_par' fig_par: no visible binding for global variable 'colo_fig_par' graphfact.RF: no visible binding for global variable 'diversity.RF' graphfact.RF: no visible binding for global variable 'fact.RF' heat.mapGUI.RF : compute.heatmap : newdist: no visible global function definition for 'dsvdis' heat.mapGUI.RF : compute.heatmap: no visible binding for global variable 'nf' heat.mapGUI.RF : compute.heatmap: no visible binding for global variable 'factt' import_variable.RF : import_variable.RF_temp : import.file: no visible binding for global variable 'mat.analyse.RF' import_variable.RF : import_variable.RF_Robject: no visible binding for '<<-' assignment to 'none' import_variable.RF : import_variable.RF_Robject: no visible binding for '<<-' assignment to 'aaa' import_variable.RF : import_variable.RF_Robject: no visible binding for global variable 'aaa' import_variable.RF : import_variable.RF_Robject : ess: no visible binding for global variable 'aaa' import_variable.RF : import_variable.RF_Robject : ess: no visible binding for global variable 'nb' import_variable.RF: no visible binding for global variable 'nf' language.RF: no visible binding for global variable 'nf' loadGUI.RF: no visible binding for global variable 'filename.RF' mds.RF : temp: no visible binding for global variable 'nf' mds.RF : temp: no visible binding for '<<-' assignment to 'SRF_init_mds.type' mds.RF : temp: no visible binding for global variable 'SRF_init_mds.type' mds.RF : temp: no visible binding for '<<-' assignment to 'SRF_init_nbperm' mds.RF : temp : best.nmds: no visible binding for global variable 'SRF_init_mds.type' mds.RF : temp: no visible binding for global variable 'SRF.init.prox.raw' mds.RF : temp: no visible binding for global variable 'SRF_init_nbperm' mds.RF : temp: no visible binding for global variable 'URF_mds.type' mds.RF : heatmap.temp: no visible binding for global variable 'fact.RF' mds.RF : heatmap.temp: no visible binding for '<<-' assignment to 'nf3' mds.RF : heatmap.temp: no visible binding for global variable 'nf' mds.RF : heatmap.temp: no visible binding for '<<-' assignment to 'factt' mds.RF : heatmap.temp: no visible binding for global variable 'SRF.init.prox.raw' mds.RF : heatmap.temp: no visible binding for global variable 'mat.analyse.RF' mds.RF : heatmap.temp: no visible binding for global variable 'factt' mds.RF : heatmap.temp: no visible binding for '<<-' assignment to 'tree_algo' mds.RF : heatmap.temp: no visible binding for global variable 'tree_algo' mds.RF : heatmap.temp: no visible binding for global variable 'nf3' mds.RF : plot_mds: no visible binding for global variable 'SRF_ini_mds' mds.RF : plot_mds: no visible binding for global variable 'fact.RF' mds.RF : plot_mds: no visible binding for '<<-' assignment to 'factt' mds.RF : plot_mds: no visible binding for global variable 'nf' mds.RF : plot_mds: no visible binding for global variable 'SRF_init_mds.type' mds.RF : plot_mds: no visible binding for global variable 'fact.supRF.init' mds.RF : plot_mds: no visible binding for global variable 'SRF_init_nbperm' mds.RF : plot_mds: no visible binding for global variable 'factt' mds.RF: no visible binding for '<<-' assignment to 'nf1' mds.RF: no visible binding for global variable 'nf' mds.RF: no visible binding for global variable 'nf1' mds.URF : temp: no visible binding for global variable 'nf' mds.URF : temp: no visible binding for '<<-' assignment to 'URF_mds.type' mds.URF : temp: no visible binding for global variable 'URF_mds.type' mds.URF : temp: no visible binding for '<<-' assignment to 'URF_mds_nbperm' mds.URF : temp : best.nmds: no visible binding for global variable 'URF_mds.type' mds.URF : temp: no visible binding for global variable 'URF_mean' mds.URF : temp: no visible binding for global variable 'URF_mds_nbperm' mds.URF : heatmap.temp: no visible binding for global variable 'fact.RF' mds.URF : heatmap.temp: no visible binding for '<<-' assignment to 'nf3' mds.URF : heatmap.temp: no visible binding for global variable 'nf' mds.URF : heatmap.temp: no visible binding for '<<-' assignment to 'factt' mds.URF : heatmap.temp: no visible binding for global variable 'URF_mean' mds.URF : heatmap.temp: no visible binding for global variable 'mat.analyse.RF' mds.URF : heatmap.temp: no visible binding for global variable 'SRF_ini_myvarimp' mds.URF : heatmap.temp: no visible binding for global variable 'factt' mds.URF : heatmap.temp: no visible binding for '<<-' assignment to 'tree_algo' mds.URF : heatmap.temp: no visible binding for global variable 'tree_algo' mds.URF : heatmap.temp: no visible binding for global variable 'nf3' mds.URF : plot_mds.temp: no visible binding for global variable 'fact.RF' mds.URF : plot_mds.temp: no visible binding for '<<-' assignment to 'factt' mds.URF : plot_mds.temp: no visible binding for global variable 'nf' mds.URF : plot_mds.temp: no visible binding for global variable 'URF_mds' mds.URF : plot_mds.temp: no visible binding for global variable 'URF_mds.type' mds.URF : plot_mds.temp: no visible binding for global variable 'URF_meth' mds.URF : plot_mds.temp: no visible binding for global variable 'URF_mds_nbperm' mds.URF : plot_mds.temp: no visible binding for global variable 'factt' mds.URF: no visible binding for '<<-' assignment to 'nff2' mds.URF: no visible binding for global variable 'nf' mds.URF: no visible binding for global variable 'nff2' mds.fitted.RF : temp: no visible binding for global variable 'nf' mds.fitted.RF : temp: no visible binding for '<<-' assignment to 'SRF_fitted_mds.type' mds.fitted.RF : temp: no visible binding for global variable 'SRF_fitted_mds.type' mds.fitted.RF : temp: no visible binding for '<<-' assignment to 'SRF_fitted_nbperm' mds.fitted.RF : temp : best.nmds: no visible binding for global variable 'SRF_fitted_mds.type' mds.fitted.RF : temp: no visible binding for global variable 'SRF.fitted.prox.raw' mds.fitted.RF : temp: no visible binding for global variable 'SRF_fitted_nbperm' mds.fitted.RF : temp: no visible binding for global variable 'URF_mds.type' mds.fitted.RF : temp: no visible binding for '<<-' assignment to 'SRF_fitted_mds.typee' mds.fitted.RF : heatmap.temp: no visible binding for global variable 'SRF.fitted.prox.raw' mds.fitted.RF : heatmap.temp: no visible binding for global variable 'mat.analyse.RF.fitted' mds.fitted.RF : heatmap.temp: no visible binding for global variable 'SRF_ini_myvarimp_selected' mds.fitted.RF : heatmap.temp: no visible binding for global variable 'fact.RF' mds.fitted.RF : heatmap.temp: no visible binding for global variable 'fact.supRF.fitted' mds.fitted.RF : heatmap.temp: no visible binding for '<<-' assignment to 'tree_algo_fitted' mds.fitted.RF : heatmap.temp: no visible binding for global variable 'nf' mds.fitted.RF : heatmap.temp: no visible binding for global variable 'tree_algo_fitted' mds.fitted.RF : plot_mds.RF.tempp: no visible binding for '<<-' assignment to 'URF_temp_mds' mds.fitted.RF : plot_mds.RF.tempp: no visible binding for global variable 'SRF_fitted_mds' mds.fitted.RF : plot_mds.RF.tempp: no visible binding for global variable 'fact.RF' mds.fitted.RF : plot_mds.RF.tempp: no visible binding for '<<-' assignment to 'factt' mds.fitted.RF : plot_mds.RF.tempp: no visible binding for global variable 'nf' mds.fitted.RF : plot_mds.RF.tempp: no visible binding for global variable 'URF_temp_mds' mds.fitted.RF : plot_mds.RF.tempp: no visible binding for global variable 'SRF_fitted_mds.type' mds.fitted.RF : plot_mds.RF.tempp: no visible binding for global variable 'fact.supRF.init' mds.fitted.RF : plot_mds.RF.tempp: no visible binding for global variable 'SRF_ini_myvarimp_selected' mds.fitted.RF : plot_mds.RF.tempp: no visible binding for global variable 'SRF_fitted_nbperm' mds.fitted.RF : plot_mds.RF.tempp: no visible binding for global variable 'factt' mds.fitted.RF: no visible binding for '<<-' assignment to 'nf6' mds.fitted.RF: no visible binding for global variable 'nf' mds.fitted.RF: no visible binding for global variable 'nf6' memory.increase: no visible binding for global variable 'nf' memory.increase: no visible binding for '<<-' assignment to 'mem_lim' misclassification_ini: no visible binding for global variable 'filename.RF' misclassification_ini: no visible binding for global variable 'SRF_ini_dat' misclassification_ini: no visible binding for global variable 'SRF_ini' misclassification_ini: no visible binding for global variable 'SRF_ini_dat_fitted' misclassification_ini: no visible binding for global variable 'SRF_ini_fitted' new.SRF.OOB : temp: no visible binding for global variable 'fact.RF' new.SRF.OOB : temp: no visible binding for '<<-' assignment to 'fact.temp' new.SRF.OOB : temp: no visible binding for global variable 'nf' new.SRF.OOB : temp: no visible binding for '<<-' assignment to 'nbfor.temp' new.SRF.OOB : temp: no visible binding for '<<-' assignment to 'nbtree.temp' new.SRF.OOB : temp: no visible binding for '<<-' assignment to 'decrease_nb_var_nbtree' new.SRF.OOB : temp: no visible binding for global variable 'nbtree.temp' new.SRF.OOB : temp: no visible binding for '<<-' assignment to 'numb_temp_min' new.SRF.OOB : temp: no visible binding for '<<-' assignment to 'numb_temp_max' new.SRF.OOB : temp: no visible binding for global variable 'mat.analyse.RF' new.SRF.OOB : temp: no visible binding for '<<-' assignment to 'probee' new.SRF.OOB : temp: no visible binding for global variable 'fact.temp' new.SRF.OOB : temp: no visible binding for global variable 'probee' new.SRF.OOB : temp: no visible binding for global variable 'numb_temp_max' new.SRF.OOB : temp: no visible binding for global variable 'numb_temp_min' new.SRF.OOB : temp: no visible binding for global variable 'nbfor.temp' new.SRF.OOB : temp: no visible binding for '<<-' assignment to 'zir' new.SRF.OOB : temp: no visible binding for global variable 'zir' new.SRF.OOB : temp: no visible binding for global variable 'decrease_nb_var_nbtree' new.SRF.OOB : temp: no visible binding for global variable 'SRF.init.prox.raw' new.SRF.OOB : temp: no visible binding for '<<-' assignment to 'finnal1' new.SRF.OOB : temp: no visible binding for '<<-' assignment to 'finnal_cor1' new.SRF.OOB : temp: no visible binding for global variable 'finnal1' new.SRF.OOB : temp: no visible binding for global variable 'finnal_cor1' new.SRF.OOB: no visible binding for '<<-' assignment to 'nf5' new.SRF.OOB: no visible binding for global variable 'nf' new.SRF.OOB: no visible binding for global variable 'nf5' new.SRF.OOB: no visible binding for global variable 'SRF_ini_tune_nb_var' new.SRF.OOB.aff : temp: no visible binding for global variable 'fact.RF' new.SRF.OOB.aff : temp: no visible binding for '<<-' assignment to 'fact.temp' new.SRF.OOB.aff : temp: no visible binding for global variable 'nf' new.SRF.OOB.aff : temp: no visible binding for '<<-' assignment to 'nbfor.temp' new.SRF.OOB.aff : temp: no visible binding for '<<-' assignment to 'decrease_nb_var_nbfor_aff' new.SRF.OOB.aff : temp: no visible binding for global variable 'nbfor.temp' new.SRF.OOB.aff : temp: no visible binding for '<<-' assignment to 'nbtree.temp' new.SRF.OOB.aff : temp: no visible binding for '<<-' assignment to 'decrease_nb_var_nbtree_aff' new.SRF.OOB.aff : temp: no visible binding for global variable 'nbtree.temp' new.SRF.OOB.aff : temp : plot.adjust.numb.var1: no visible binding for global variable 'SRF_ini_tune_nb_var' new.SRF.OOB.aff : temp : plot.adjust.numb.var1: no visible binding for '<<-' assignment to 'numb_temp' new.SRF.OOB.aff : temp : plot.adjust.numb.var1: no visible binding for global variable 'nf' new.SRF.OOB.aff : temp : plot.adjust.numb.var2: no visible binding for global variable 'SRF_ini_tune_nb_var' new.SRF.OOB.aff : temp : plot.adjust.numb.var2: no visible binding for global variable 'numb_temp_min' new.SRF.OOB.aff : temp : plot.adjust.numb.var2: no visible binding for '<<-' assignment to 'numb_temp' new.SRF.OOB.aff : temp : plot.adjust.numb.var2: no visible binding for global variable 'nf' new.SRF.OOB.aff : temp: no visible binding for '<<-' assignment to 'numb_temp_min' new.SRF.OOB.aff : temp: no visible binding for global variable 'numb_temp' new.SRF.OOB.aff : temp: no visible binding for '<<-' assignment to 'numb_temp_max' new.SRF.OOB.aff : temp: no visible binding for global variable 'mat.analyse.RF' new.SRF.OOB.aff : temp: no visible binding for global variable 'numb_temp_max' new.SRF.OOB.aff : temp: no visible binding for global variable 'numb_temp_min' new.SRF.OOB.aff : temp: no visible binding for global variable 'decrease_nb_var_nbfor_aff' new.SRF.OOB.aff : temp: no visible binding for '<<-' assignment to 'zir' new.SRF.OOB.aff : temp: no visible binding for global variable 'zir' new.SRF.OOB.aff : temp: no visible binding for global variable 'fact.temp' new.SRF.OOB.aff : temp: no visible binding for global variable 'decrease_nb_var_nbtree_aff' new.SRF.OOB.aff : temp: no visible binding for global variable 'SRF.init.prox.raw' new.SRF.OOB.aff : temp: no visible binding for '<<-' assignment to 'SRF_ini_tune_nb_var_aff_maxmin' new.SRF.OOB.aff : plot_temp: no visible binding for global variable 'SRF_ini_tune_nb_var' new.SRF.OOB.aff : plot_temp: no visible binding for global variable 'SRF_ini_tune_nb_var_aff' new.SRF.OOB.aff : plot_temp: no visible binding for global variable 'SRF_ini_myvarimp' new.SRF.OOB.aff : plot_temp: no visible binding for global variable 'SRF_ini_tune_nb_var_aff_maxmin' new.SRF.OOB.aff : plot_temp: no visible binding for global variable 'SRF_ini_tune_nb_var_aff_cor' new.SRF.OOB.aff: no visible binding for '<<-' assignment to 'nf4' new.SRF.OOB.aff: no visible binding for global variable 'nf' new.SRF.OOB.aff: no visible binding for global variable 'nf4' perm.MDA.init : temp: no visible binding for global variable 'fact.RF' perm.MDA.init : temp: no visible binding for global variable 'nf' perm.MDA.init : temp: no visible binding for '<<-' assignment to 'perm.number' perm.MDA.init : temp: no visible binding for '<<-' assignment to 'perm.nbtree.temp' perm.MDA.init : temp: no visible binding for global variable 'perm.nbtree.temp' perm.MDA.init : temp: no visible binding for global variable 'mat.analyse.RF' perm.MDA.init : temp: no visible binding for global variable 'perm.number' perm.MDA.init : temp: no visible binding for global variable 'SRF_ini_myvarimp' perm.MDA.init: no visible binding for global variable 'nf' perm.MDA.init: no visible binding for global variable 'pval.init' plot_adjust.numb.var : temp: no visible binding for global variable 'SRF_ini_tune_nb_var' plot_adjust.numb.var : temp: no visible binding for global variable 'SRF_ini_myvarimp' plot_adjust.numb.var : temp: no visible binding for global variable 'SRF_ini_tune_nb_var_aff_maxmin' plot_adjust.numb.var : temp: no visible binding for global variable 'SRF_ini_tune_nb_var_aff_cor' plot_adjust.numb.var : temp: no visible binding for global variable 'SRF_ini_tune_nb_var_aff' plot_adjust.numb.var : temp: no visible binding for '<<-' assignment to 'numb_temp' plot_adjust.numb.var : temp: no visible binding for global variable 'nf' plot_adjust.numb.var : temp: no visible binding for global variable 'numb_temp' plot_adjust.numb.var : temp: no visible binding for '<<-' assignment to 'SRF_ini_tune_nb_var_selected' plot_adjust.numb.var : temp: no visible binding for global variable 'mat.analyse.RF' plot_adjust.numb.var: no visible binding for '<<-' assignment to 'nff4' plot_adjust.numb.var: no visible binding for global variable 'nf' plot_adjust.numb.var: no visible binding for global variable 'nff4' plot_univ : tablee: no visible binding for '<<-' assignment to 'probee' plot_univ : tablee: no visible binding for global variable 'SRF_ini_myvarimp_selected' plot_univ : tablee: no visible binding for global variable 'factt' plot_univ : tablee: no visible binding for global variable 'probee' plot_univ : tablee: no visible binding for global variable 'mat.analyse.RF.fitted' plot_univ : tablee: no visible binding for '<<-' assignment to 'SRF_ini_mean_probe' plot_univ : tablee: no visible binding for global variable 'fact.RF' plot_univ : tablee: no visible binding for global variable 'nf7' plot_univ : tablee: no visible binding for global variable 'SRF_ini_mean_probe' plot_univ : barplott: no visible binding for global variable 'SRF_ini_mean_probe' plot_univ : barplott: no visible binding for global variable 'factt' plot_univ : barplott: no visible binding for global variable 'mat.analyse.RF.fitted' plot_univ : circleplot: no visible binding for global variable 'probee' plot_univ : circleplot: no visible binding for global variable 'mat.analyse.RF' plot_univ : circleplot: no visible binding for global variable 'SRF_fitted_mds' plot_univ : circleplot: no visible binding for global variable 'factt' plot_univ : meansd: no visible binding for global variable 'mat.analyse.RF' plot_univ : meansd: no visible binding for global variable 'factt' plot_univ : meansd: no visible binding for global variable 'probee' plot_univ : meansd: no visible binding for global variable 'fact.RF' plot_univ : meansd: no visible binding for global variable 'nf7' plot_univ : domm: no visible binding for '<<-' assignment to 'probee' plot_univ : domm: no visible binding for global variable 'SRF_ini_myvarimp_selected' plot_univ : domm: no visible binding for global variable 'factt' plot_univ : domm: no visible binding for global variable 'probee' plot_univ : domm: no visible binding for global variable 'mat.analyse.RF.fitted' plot_univ: no visible binding for global variable 'fact.RF' plot_univ: no visible binding for '<<-' assignment to 'nf7' plot_univ: no visible binding for global variable 'nf' plot_univ: no visible binding for '<<-' assignment to 'factt' selection.RF : deletefactGUI.RF : select.factor: no visible binding for global variable 'fact.RF' selection.RF : deletefactGUI.RF : select.factor : select.level: no visible binding for global variable 'fact.RF' selection.RF : deletefactGUI.RF : select.factor : select.level: no visible binding for global variable 'ae' selection.RF : deletefactGUI.RF : select.factor : select.level : window.factor : delete.selected: no visible binding for global variable 'ae' selection.RF : deletefactGUI.RF : select.factor : select.level : window.factor : delete.selected: no visible binding for '<<-' assignment to 'mat.analyse.RF' selection.RF : deletefactGUI.RF : select.factor : select.level : window.factor : delete.selected: no visible binding for global variable 'mat.analyse.RF' selection.RF : deletefactGUI.RF : select.factor : select.level : window.factor : delete.selected: no visible binding for '<<-' assignment to 'param.RF' selection.RF : deletefactGUI.RF : select.factor : select.level : window.factor : delete.selected: no visible binding for global variable 'param.RF' selection.RF : deletefactGUI.RF : select.factor : select.level : window.factor : keep.selected: no visible binding for global variable 'ae' selection.RF : deletefactGUI.RF : select.factor : select.level : window.factor : keep.selected: no visible binding for '<<-' assignment to 'mat.analyse.RF' selection.RF : deletefactGUI.RF : select.factor : select.level : window.factor : keep.selected: no visible binding for global variable 'mat.analyse.RF' selection.RF : deletefactGUI.RF : select.factor : select.level : window.factor : keep.selected: no visible binding for '<<-' assignment to 'param.RF' selection.RF : deletefactGUI.RF : select.factor : select.level : window.factor : keep.selected: no visible binding for global variable 'param.RF' selection.RF : deletefactGUI.RF : select.factor : window.level: no visible binding for '<<-' assignment to 'ae' selection.RF : deselect.RF: no visible binding for '<<-' assignment to 'mat.analyse.RF' selection.RF : deselect.RF: no visible binding for global variable 'mat.analyse.RF.init' selection.RF : deselect.RF: no visible binding for '<<-' assignment to 'fact.RF' selection.RF : deselect.RF: no visible binding for global variable 'fact.RF.init' selection.RF : deselect.RF: no visible binding for '<<-' assignment to 'param.RF' selection.RF : deselect.RF: no visible binding for global variable 'param.RF.init' selection.RF : deselect.RF: no visible binding for global variable 'tt' selection.RF: no visible binding for global variable 'nf' several_URF : several_URF_temp : bestforest: no visible binding for global variable 'mat.analyse.RF' several_URF : several_URF_temp : bestforest: no visible binding for global variable 'URF_meth' several_URF : several_URF_temp : bestforest: no visible binding for '<<-' assignment to 'datRFsyn' several_URF : several_URF_temp : bestforest: no visible binding for global variable 'URF_nbtree' several_URF : several_URF_temp : bestforest: no visible binding for global variable 'datRFsyn' several_URF : several_URF_temp: no visible binding for global variable 'mat.analyse.RF' several_URF : several_URF_temp: no visible binding for global variable 'nf' several_URF : several_URF_temp: no visible binding for '<<-' assignment to 'URF_nbtree' several_URF : several_URF_temp: no visible binding for global variable 'URF_nbtree' several_URF : several_URF_temp: no visible binding for global variable 'URF_meth' several_URF: no visible binding for '<<-' assignment to 'nff1' several_URF: no visible binding for global variable 'nf' several_URF: no visible binding for global variable 'nff1' supRFGUI.RF : prediction: no visible binding for global variable 'SRF_ini_prediction' supRFGUI.RF : RF_temp: no visible binding for global variable 'fact.RF' supRFGUI.RF : RF_temp: no visible binding for '<<-' assignment to 'fact.temp' supRFGUI.RF : RF_temp: no visible binding for global variable 'nf' supRFGUI.RF : RF_temp: no visible binding for '<<-' assignment to 'fact.supRF.init' supRFGUI.RF : RF_temp: no visible binding for '<<-' assignment to 'SRF_ini_nbforest' supRFGUI.RF : RF_temp: no visible binding for '<<-' assignment to 'nbtree.temp' supRFGUI.RF : RF_temp: no visible binding for '<<-' assignment to 'SRF.init.nbtree' supRFGUI.RF : RF_temp: no visible binding for global variable 'nbtree.temp' supRFGUI.RF : RF_temp: no visible binding for global variable 'mat.analyse.RF' supRFGUI.RF : RF_temp: no visible binding for '<<-' assignment to 'mtry.temp' supRFGUI.RF : RF_temp: no visible binding for '<<-' assignment to 'SRF.init.mtry' supRFGUI.RF : RF_temp: no visible binding for global variable 'mtry.temp' supRFGUI.RF : RF_temp: no visible binding for global variable 'fact.temp' supRFGUI.RF : RF_temp: no visible binding for '<<-' assignment to 'SRF_ini_dat' supRFGUI.RF : RF_temp: no visible binding for '<<-' assignment to 'SRF_ini_OOB' supRFGUI.RF : RF_temp: no visible binding for global variable 'SRF_ini_nbforest' supRFGUI.RF : RF_temp: no visible binding for '<<-' assignment to 'OOB' supRFGUI.RF : RF_temp: no visible binding for global variable 'SRF_ini_dat' supRFGUI.RF : RF_temp: no visible binding for global variable 'OOB' supRFGUI.RF : RF_temp: no visible binding for global variable 'SRF_ini_OOB' supRFGUI.RF : RF_temp: no visible binding for '<<-' assignment to 'SRF.init.prox.raw' supRFGUI.RF : RF_temp: no visible binding for '<<-' assignment to 'SRF_ini_prediction' supRFGUI.RF : RF_temp: no visible binding for '<<-' assignment to 'best' supRFGUI.RF : RF_temp: no visible binding for global variable 'best' supRFGUI.RF : RF_temp: no visible binding for global variable 'tt' supRFGUI.RF : RF_temp: no visible binding for global variable 'nb' supRFGUI.RF: no visible binding for '<<-' assignment to 'nff' supRFGUI.RF: no visible binding for global variable 'nf' supRFGUI.RF: no visible binding for global variable 'nff' supRFGUI.fitted.RF : prediction: no visible binding for global variable 'SRF_fit_prediction' supRFGUI.fitted.RF : RF_temp: no visible binding for global variable 'fact.RF' supRFGUI.fitted.RF : RF_temp: no visible binding for '<<-' assignment to 'fact.temp' supRFGUI.fitted.RF : RF_temp: no visible binding for global variable 'nf' supRFGUI.fitted.RF : RF_temp: no visible binding for '<<-' assignment to 'fact.supRF.fitted' supRFGUI.fitted.RF : RF_temp: no visible binding for '<<-' assignment to 'SRF_ini_nbforest_fitted' supRFGUI.fitted.RF : RF_temp: no visible binding for '<<-' assignment to 'nbtree.temp' supRFGUI.fitted.RF : RF_temp: no visible binding for '<<-' assignment to 'SRF.fit.nbtree' supRFGUI.fitted.RF : RF_temp: no visible binding for global variable 'nbtree.temp' supRFGUI.fitted.RF : RF_temp: no visible binding for global variable 'mat.analyse.RF.fitted' supRFGUI.fitted.RF : RF_temp: no visible binding for '<<-' assignment to 'mtry.temp' supRFGUI.fitted.RF : RF_temp: no visible binding for '<<-' assignment to 'SRF.fit.mtry' supRFGUI.fitted.RF : RF_temp: no visible binding for global variable 'mtry.temp' supRFGUI.fitted.RF : RF_temp: no visible binding for global variable 'fact.temp' supRFGUI.fitted.RF : RF_temp: no visible binding for '<<-' assignment to 'SRF_ini_dat_fitted' supRFGUI.fitted.RF : RF_temp: no visible binding for '<<-' assignment to 'SRF_ini_OOB_fitted' supRFGUI.fitted.RF : RF_temp: no visible binding for global variable 'SRF_ini_nbforest_fitted' supRFGUI.fitted.RF : RF_temp: no visible binding for '<<-' assignment to 'OOB' supRFGUI.fitted.RF : RF_temp: no visible binding for global variable 'SRF_ini_dat_fitted' supRFGUI.fitted.RF : RF_temp: no visible binding for global variable 'OOB' supRFGUI.fitted.RF : RF_temp: no visible binding for global variable 'SRF_ini_OOB_fitted' supRFGUI.fitted.RF : RF_temp: no visible binding for '<<-' assignment to 'SRF.fitted.prox.raw' supRFGUI.fitted.RF : RF_temp: no visible binding for '<<-' assignment to 'SRF_fit_prediction' supRFGUI.fitted.RF : RF_temp: no visible binding for '<<-' assignment to 'best' supRFGUI.fitted.RF : RF_temp: no visible binding for global variable 'best' supRFGUI.fitted.RF : RF_temp: no visible binding for global variable 'tt' supRFGUI.fitted.RF : RF_temp: no visible binding for global variable 'nb' supRFGUI.fitted.RF: no visible binding for '<<-' assignment to 'nff' supRFGUI.fitted.RF: no visible binding for global variable 'nf' supRFGUI.fitted.RF: no visible binding for global variable 'nff' tk_select: no visible binding for global variable 'fact.RF.init' tk_select: no visible binding for global variable 'fact.RF' tk_select: no visible binding for global variable 'tb1' tk_select: no visible binding for global variable 'mat.analyse.RF' tk_select: no visible binding for global variable 'mat.analyse.RF.init' tk_select: no visible binding for global variable 'tb2' tk_select: no visible binding for global variable 'URF_meth' tk_select: no visible binding for global variable 'URF_tune_mtry_incr' tk_select: no visible binding for global variable 'URF_tune_mtry_forest' tk_select: no visible binding for global variable 'URF_tune_mtry_nbtree' tk_select: no visible binding for global variable 'URF_nbforest' tk_select: no visible binding for global variable 'URF_nbtree' tk_select: no visible binding for global variable 'URF_mtryy' tk_select: no visible binding for global variable 'URF_mds.type' tk_select: no visible binding for global variable 'URF_mds' tk_select: no visible binding for global variable 'URF_mds_nbperm' tk_select: no visible binding for global variable 'cluster_algo' tk_select: no visible binding for global variable 'nb_clust_URF' tk_select: no visible binding for global variable 'tb3' tk_select: no visible binding for global variable 'SRF_ini_mtry' tk_select: no visible binding for global variable 'SRF_ini_tunemtry_nbforest' tk_select: no visible binding for global variable 'SRF_ini_tunemtry_nbtree' tk_select: no visible binding for global variable 'fact.supRF.init' tk_select: no visible binding for global variable 'SRF.init.mtry' tk_select: no visible binding for global variable 'SRF_ini_OOB' tk_select: no visible binding for global variable 'SRF_ini_nbforest' tk_select: no visible binding for global variable 'SRF.init.nbtree' tk_select: no visible binding for global variable 'SRF_init_mds.type' tk_select: no visible binding for global variable 'SRF_ini_mds' tk_select: no visible binding for global variable 'SRF_init_nbperm' tk_select: no visible binding for global variable 'MDA_conditional' tk_select: no visible binding for global variable 'decrease_nb_var_nbtree' tk_select: no visible binding for global variable 'decrease_nb_var_mtryincr' tk_select: no visible binding for global variable 'decrease_nb_var_nbfor_aff' tk_select: no visible binding for global variable 'decrease_nb_var_nbtree_aff' tk_select: no visible binding for global variable 'SRF_ini_tune_nb_var_aff_maxmin' tk_select: no visible binding for global variable 'tb4' tk_select: no visible binding for global variable 'SRF_ini_myvarimp_selected' tk_select: no visible binding for global variable 'SRF_ini_myvarimp' tk_select: no visible binding for global variable 'mat.analyse.RF.fitted' tk_select: no visible binding for global variable 'SRF_ini_mtry_fitted' tk_select: no visible binding for global variable 'SRF_fit_tunemtry_nbforest' tk_select: no visible binding for global variable 'SRF_fin_tunemtry_nbtree' tk_select: no visible binding for global variable 'fact.supRF.fitted' tk_select: no visible binding for global variable 'SRF.fit.mtry' tk_select: no visible binding for global variable 'SRF_ini_OOB_fitted' tk_select: no visible binding for global variable 'correlation' tk_select: no visible binding for global variable 'SRF_ini_nbforest_fitted' tk_select: no visible binding for global variable 'SRF.fit.nbtree' tk_select: no visible binding for global variable 'SRF_fitted_mds.type' tk_select: no visible binding for global variable 'SRF_fitted_mds' tk_select: no visible binding for global variable 'SRF_fitted_nbperm' tk_select: no visible binding for global variable 'tb5' tk_select: no visible binding for global variable 'ctree_fitted_pval' tk_select: no visible binding for global variable 'tb6' tk_select: no visible binding for global variable 'colo_fig_par' tk_select: no visible binding for global variable 'nb' unsup.mode.RF: no visible binding for global variable 'nf' unsup.mode.RF: no visible binding for global variable 'tt' waitGUI : temp: no visible binding for global variable 'colo_fig_par' waitGUI: no visible binding for '<<-' assignment to 'z' waitGUI: no visible binding for global variable 'z' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking examples ... OK * checking PDF version of manual ... OK