* using log directory 'd:/Rcompile/CRANpkg/local/2.11/StatFingerprints.Rcheck' * using R version 2.11.1 Patched (2010-07-29 r52657) * using session charset: ISO8859-1 * checking for file 'StatFingerprints/DESCRIPTION' ... OK * this is package 'StatFingerprints' version '2.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'StatFingerprints' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Robject2SFGUI: no visible binding for '<<-' assignment to 'none' Robject2SFGUI: no visible binding for '<<-' assignment to 'aaa' Robject2SFGUI: no visible binding for global variable 'aaa' Robject2SFGUI : ess: no visible binding for global variable 'aaa' StatFingerprints: no visible binding for '<<-' assignment to 'filename' StatFingerprints: no visible binding for global variable 'filename' StatFingerprints: no visible binding for '<<-' assignment to 'mat.raw' StatFingerprints: no visible binding for global variable 'mat' StatFingerprints: no visible binding for global variable 'mat.raw' StatFingerprints: no visible binding for '<<-' assignment to 'mat.align' StatFingerprints: no visible binding for global variable 'mat1' StatFingerprints: no visible binding for global variable 'mat.align' StatFingerprints: no visible binding for '<<-' assignment to 'rxref' StatFingerprints: no visible binding for global variable 'rxref' StatFingerprints: no visible binding for '<<-' assignment to 'fact' StatFingerprints: no visible binding for global variable 'fact' StatFingerprints: no visible binding for '<<-' assignment to 'param' StatFingerprints: no visible binding for global variable 'param' StatFingerprints: no visible binding for '<<-' assignment to 'div' StatFingerprints: no visible binding for global variable 'div' StatFingerprints: no visible binding for '<<-' assignment to 'alig' StatFingerprints: no visible binding for global variable 'alig' StatFingerprints: no visible binding for '<<-' assignment to 'mat.background' StatFingerprints: no visible binding for global variable 'mat2' StatFingerprints: no visible binding for global variable 'mat.background' StatFingerprints: no visible binding for '<<-' assignment to 'mat.baseline' StatFingerprints: no visible binding for global variable 'mat3' StatFingerprints: no visible binding for global variable 'mat.baseline' StatFingerprints: no visible binding for '<<-' assignment to 'mat.range' StatFingerprints: no visible binding for global variable 'mat5' StatFingerprints: no visible binding for global variable 'mat.range' StatFingerprints: no visible binding for '<<-' assignment to 'mat.analyse' StatFingerprints: no visible binding for global variable 'mat6' StatFingerprints: no visible binding for global variable 'mat.analyse' StatFingerprints: no visible binding for '<<-' assignment to 'mat.normalise' StatFingerprints: no visible binding for global variable 'mat7' StatFingerprints: no visible binding for global variable 'mat.normalise' StatFingerprints: no visible binding for '<<-' assignment to 'mat.rebuilt' StatFingerprints: no visible binding for global variable 'mat8' StatFingerprints: no visible binding for global variable 'mat.rebuilt' StatFingerprints: no visible binding for '<<-' assignment to 'mat.binary' StatFingerprints: no visible binding for global variable 'mat9' StatFingerprints: no visible binding for global variable 'mat.binary' StatFingerprints : export.matrix: no visible binding for global variable 'mat.raw' StatFingerprints : export.matrix : OnOK: no visible binding for global variable 'mat.raw' StatFingerprints : export.matrix : OnOK: no visible binding for global variable 'div' StatFingerprints : export.matrix : OnOK: no visible binding for global variable 'alig' StatFingerprints : export.matrix : OnOK: no visible binding for global variable 'mat.align' StatFingerprints : export.matrix : OnOK: no visible binding for global variable 'mat.background' StatFingerprints : export.matrix : OnOK: no visible binding for global variable 'mat.baseline' StatFingerprints : export.matrix : OnOK: no visible binding for global variable 'mat.range' StatFingerprints : export.matrix : OnOK: no visible binding for global variable 'mat.normalise' StatFingerprints : export.matrix : OnOK: no visible binding for global variable 'mat.binary' StatFingerprints : edit.div: no visible binding for '<<-' assignment to 'div' StatFingerprints : edit.div: no visible binding for global variable 'div' StatFingerprints : edit.summary.div: no visible binding for global variable 'div' StatFingerprints : edit.fact: no visible binding for '<<-' assignment to 'fact' StatFingerprints : edit.fact: no visible binding for global variable 'fact' StatFingerprints : edit.summary.fact: no visible binding for global variable 'fact' StatFingerprints : edit.param: no visible binding for '<<-' assignment to 'param' StatFingerprints : edit.param: no visible binding for global variable 'param' StatFingerprints : edit.summary.param: no visible binding for global variable 'param' StatFingerprints : .write: no visible binding for global variable 'filename' StatFingerprints : .write: no visible binding for global variable 'alig' StatFingerprints : .write: no visible binding for global variable 'mat.raw' StatFingerprints : .write: no visible binding for global variable 'div' StatFingerprints : .write: no visible binding for global variable 'fact' StatFingerprints : .write: no visible binding for global variable 'param' StatFingerprints : .write: no visible binding for global variable 'rxref' StatFingerprints : .write: no visible binding for global variable 'mat.background' StatFingerprints : .write: no visible binding for global variable 'mat.baseline' StatFingerprints : .write: no visible binding for global variable 'mat.range' StatFingerprints : .write: no visible binding for global variable 'mat.normalise' StatFingerprints : .write: no visible binding for global variable 'mat.binary' StatFingerprints : run: no visible binding for global variable 'txt' align: no visible binding for global variable 'mat.raw' alignGUI: no visible binding for global variable 'mat.raw' alignGUI: no visible binding for global variable 'rxref' alignGUI2: no visible binding for global variable 'alig' alignGUI2 : select.profile: no visible binding for global variable 'mat.raw' alignGUI2 : select.profile: no visible binding for global variable 'rxref' alignGUI2 : select.profile: no visible binding for '<<-' assignment to 'mat.analyse' anovaGUI: no visible binding for global variable 'param' anovaGUI: no visible binding for global variable 'div' anovaGUI: no visible binding for global variable 'mat.analyse' anovaGUI: no visible binding for global variable 'fact' anovaGUI: no visible binding for '<<-' assignment to 'j' anovaGUI : create.model: no visible binding for global variable 'j' anovaGUI : create.model: no visible binding for '<<-' assignment to 'j' anovaGUI : create.model: no visible binding for '<<-' assignment to 'ano2' anovaGUI : compute.anova: no visible binding for global variable 'ano2' anovaGUI : compute.anova: no visible binding for global variable 'fact' anovaGUI : test.tukey: no visible binding for global variable 'ano2' anovaGUI : test.tukey: no visible binding for global variable 'fact' askquitGUI: no visible binding for global variable 'MainMenu' baselineGUI: no visible binding for global variable 'mat.align' baselineGUI : compute.baseline: no visible binding for '<<-' assignment to 'mat.analyse' best.nmdsGUI : compute.nmds: no visible binding for global variable 'mat.binary' best.nmdsGUI : compute.nmds: no visible binding for global variable 'mat.analyse' best.nmdsGUI : compute.nmds: no visible binding for '<<-' assignment to 'fact_temp' best.nmdsGUI : compute.nmds: no visible binding for global variable 'fact' best.nmdsGUI : compute.nmds: no visible binding for '<<-' assignment to 'param_temp' best.nmdsGUI : compute.nmds: no visible binding for global variable 'param' best.nmdsGUI : save.nmds: no visible binding for global variable 'fact_temp' best.nmdsGUI : save.nmds: no visible binding for global variable 'param_temp' best.ordination: no visible global function definition for 'reg.line' best.ordinationGUI : best.ordination.selection: no visible binding for global variable 'mat.analyse' binaryGUI: no visible binding for global variable 'mat.range' binaryGUI : help.binary: no visible binding for global variable 'mat.raw' binaryGUI : help.binary : plot.binary: no visible binding for global variable 'mat.analyse' binaryGUI : compute.binary: no visible binding for global variable 'mat.align' binaryGUI : compute.binary: no visible binding for global variable 'mat.background' binaryGUI : compute.binary: no visible binding for global variable 'mat.baseline' binaryGUI : compute.binary: no visible binding for global variable 'mat.range' binaryGUI : compute.binary: no visible binding for global variable 'mat.normalise' binaryGUI : compute.binary: no visible binding for global variable 'mat.rebuilt' binaryGUI : compute.binary: no visible binding for '<<-' assignment to 'mat.analyse' capscaleGUI: no visible binding for global variable 'param' capscaleGUI: no visible binding for global variable 'div' capscaleGUI: no visible binding for global variable 'mat.analyse' capscaleGUI: no visible binding for '<<-' assignment to 'mat.analyse.na' capscaleGUI: no visible binding for '<<-' assignment to 'j' capscaleGUI : create.model: no visible binding for global variable 'j' capscaleGUI : create.model: no visible binding for '<<-' assignment to 'j' capscaleGUI : create.model: no visible binding for '<<-' assignment to 'ano2' capscaleGUI : compute.capscale: no visible binding for global variable 'ano2' capscaleGUI : stepwise.capscale: no visible binding for global variable 'ano2' capscaleGUI : partial.capscale: no visible binding for global variable 'ano2' capscaleGUI : plot.capscale: no visible binding for global variable 'ano2' ccaGUI: no visible binding for global variable 'param' ccaGUI: no visible binding for global variable 'div' ccaGUI: no visible binding for global variable 'mat.analyse' ccaGUI: no visible binding for '<<-' assignment to 'mat.analyse.na' ccaGUI: no visible binding for '<<-' assignment to 'j' ccaGUI : create.model: no visible binding for global variable 'j' ccaGUI : create.model: no visible binding for '<<-' assignment to 'j' ccaGUI : create.model: no visible binding for '<<-' assignment to 'ano2' ccaGUI : compute.cca: no visible binding for global variable 'ano2' ccaGUI : stepwise.cca: no visible binding for global variable 'ano2' ccaGUI : partial.cca: no visible binding for global variable 'ano2' ccaGUI : plot.cca: no visible binding for global variable 'ano2' checkfact: no visible binding for global variable 'fact' checkparam: no visible binding for global variable 'param' checkparam: no visible binding for global variable 'div' checkprofile: no visible binding for global variable 'mat.raw' convertGUI: no visible binding for '<<-' assignment to 'zf3' convertGUI : view.channels: no visible binding for global variable 'zf3' convertGUI : view.channels : plot.channel: no visible binding for global variable 'zf3' convertGUI: no visible binding for global variable 'zf3' convertGUI : import.channels: no visible binding for global variable 'zf3' convertGUI : import.channels: no visible binding for '<<-' assignment to 'mat.raw' convertGUI : import.channels: no visible binding for '<<-' assignment to 'mat.analyse' convertGUI : import.channels: no visible binding for global variable 'MainMenu' correlationGUI: no visible binding for global variable 'param' correlationGUI: no visible binding for global variable 'div' correlationGUI: no visible binding for global variable 'mat.analyse' delete.backgroundGUI: no visible binding for global variable 'mat.range' delete.backgroundGUI: no visible binding for global variable 'mat.normalise' delete.backgroundGUI : load.delete.background: no visible binding for '<<-' assignment to 'mat.background' delete.backgroundGUI : load.delete.background: no visible binding for '<<-' assignment to 'mat.analyse' deleteGUI: no visible binding for global variable 'alig' deleteGUI : delete.profile: no visible binding for '<<-' assignment to 'mat.raw' deleteGUI : delete.profile: no visible binding for global variable 'mat.raw' deleteGUI : delete.profile: no visible binding for '<<-' assignment to 'div' deleteGUI : delete.profile: no visible binding for global variable 'div' deleteGUI : delete.profile: no visible binding for '<<-' assignment to 'param' deleteGUI : delete.profile: no visible binding for global variable 'param' deleteGUI : delete.profile: no visible binding for '<<-' assignment to 'mat.align' deleteGUI : delete.profile: no visible binding for global variable 'mat.align' deleteGUI : delete.profile: no visible binding for '<<-' assignment to 'alig' deleteGUI : delete.profile: no visible binding for global variable 'alig' deleteGUI : delete.profile: no visible binding for '<<-' assignment to 'mat.background' deleteGUI : delete.profile: no visible binding for global variable 'mat.background' deleteGUI : delete.profile: no visible binding for '<<-' assignment to 'mat.baseline' deleteGUI : delete.profile: no visible binding for global variable 'mat.baseline' deleteGUI : delete.profile: no visible binding for '<<-' assignment to 'mat.range' deleteGUI : delete.profile: no visible binding for global variable 'mat.range' deleteGUI : delete.profile: no visible binding for '<<-' assignment to 'mat.analyse' deleteGUI : delete.profile: no visible binding for global variable 'mat.analyse' deleteGUI : delete.profile: no visible binding for '<<-' assignment to 'mat.normalise' deleteGUI : delete.profile: no visible binding for global variable 'mat.normalise' deleteGUI : delete.profile: no visible binding for '<<-' assignment to 'mat.rebuilt' deleteGUI : delete.profile: no visible binding for global variable 'mat.rebuilt' deleteGUI : delete.profile: no visible binding for '<<-' assignment to 'mat.binary' deleteGUI : delete.profile: no visible binding for global variable 'mat.binary' deletefactGUI : select.factor: no visible binding for global variable 'fact' deletefactGUI : select.factor : select.level: no visible binding for global variable 'fact' deletefactGUI : select.factor : select.level: no visible binding for global variable 'ae' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for global variable 'ae' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for '<<-' assignment to 'mat.raw' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for global variable 'mat.raw' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for '<<-' assignment to 'div' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for global variable 'div' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for '<<-' assignment to 'param' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for global variable 'param' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for '<<-' assignment to 'alig' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for global variable 'alig' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for '<<-' assignment to 'mat.align' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for global variable 'mat.align' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for '<<-' assignment to 'mat.background' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for global variable 'mat.background' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for '<<-' assignment to 'mat.baseline' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for global variable 'mat.baseline' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for '<<-' assignment to 'mat.range' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for global variable 'mat.range' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for '<<-' assignment to 'mat.analyse' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for global variable 'mat.analyse' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for '<<-' assignment to 'mat.normalise' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for global variable 'mat.normalise' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for '<<-' assignment to 'mat.rebuilt' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for global variable 'mat.rebuilt' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for '<<-' assignment to 'mat.binary' deletefactGUI : select.factor : select.level : window.factor : delete.selected: no visible binding for global variable 'mat.binary' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for global variable 'ae' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for '<<-' assignment to 'mat.raw' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for global variable 'mat.raw' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for '<<-' assignment to 'div' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for global variable 'div' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for '<<-' assignment to 'param' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for global variable 'param' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for '<<-' assignment to 'alig' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for global variable 'alig' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for '<<-' assignment to 'mat.align' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for global variable 'mat.align' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for '<<-' assignment to 'mat.background' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for global variable 'mat.background' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for '<<-' assignment to 'mat.baseline' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for global variable 'mat.baseline' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for '<<-' assignment to 'mat.range' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for global variable 'mat.range' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for '<<-' assignment to 'mat.analyse' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for global variable 'mat.analyse' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for '<<-' assignment to 'mat.normalise' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for global variable 'mat.normalise' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for '<<-' assignment to 'mat.rebuilt' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for global variable 'mat.rebuilt' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for '<<-' assignment to 'mat.binary' deletefactGUI : select.factor : select.level : window.factor : keep.selected: no visible binding for global variable 'mat.binary' deletefactGUI : select.factor : select.level : window.factor: no visible binding for global variable 'MainMenu' deletefactGUI : select.factor : window.level: no visible binding for '<<-' assignment to 'ae' dendroGUI : compute.dendrogram: no visible binding for global variable 'mat.binary' dendroGUI : compute.dendrogram: no visible binding for global variable 'mat.analyse' des.univGUI: no visible binding for global variable 'param' des.univGUI: no visible binding for global variable 'div' des.univGUI: no visible binding for global variable 'mat.analyse' des.univGUI: no visible binding for global variable 'fact' des.univGUI : compute.shapiro.test: no visible binding for global variable 'div' des.univGUI : compute.bartlett.test: no visible binding for global variable 'div' diversities: no visible binding for global variable 'backgr' diversities: no visible binding for global variable 'mat.binary' diversitiesGUI: no visible binding for global variable 'mat.binary' diversitiesGUI : help.define.peak: no visible binding for global variable 'mat.raw' diversitiesGUI : help.define.peak : count.peaks: no visible binding for global variable 'mat.analyse' diversitiesGUI : compute.diversity: no visible binding for global variable 'mat.analyse' diversitiesGUI : export.diversity: no visible binding for global variable 'div' export.distGUI: no visible binding for global variable 'mat.raw' export.distGUI : OnOK: no visible binding for global variable 'mat.analyse' export.distGUI : OnOK: no visible global function definition for 'dsvdist' export.distGUI : OnOK: no visible binding for global variable 'mat.binary' ffcorGUI: no visible binding for global variable 'param' ffcorGUI: no visible binding for global variable 'div' ffcorGUI: no visible binding for global variable 'mat.analyse' globalanosimGUI: no visible binding for global variable 'fact' globalanosimGUI : compute.anosim: no visible binding for global variable 'mat.binary' globalanosimGUI : compute.anosim: no visible binding for global variable 'mat.analyse' globalanosimGUI : compute.anosim: no visible binding for global variable 'fact' graphfactGUI: no visible binding for global variable 'param' graphfactGUI: no visible binding for global variable 'div' graphfactGUI: no visible binding for global variable 'mat.analyse' graphfactGUI: no visible binding for global variable 'fact' graphfactGUI : graphfact : casun: no visible binding for global variable 'fact' graphfactGUI : graphfact : casun : ajseg: no visible binding for global variable 'fact' graphfactGUI : graphfact : casdeux: no visible binding for global variable 'fact' graphfactGUI : graphfact : casdeux : casdeuxd: no visible binding for global variable 'fact' heat.mapGUI : compute.heatmap: no visible binding for global variable 'mat.binary' heat.mapGUI : compute.heatmap: no visible binding for global variable 'mat.analyse' importGUI1 : import.channels: no visible binding for '<<-' assignment to 'mat.analyse' importGUI2 : import.file: no visible binding for global variable 'mat.raw' importGUI2 : import.file: no visible binding for global variable 'MainMenu' iterative.testGUI: no visible binding for global variable 'fact' iterative.testGUI : select.factor: no visible binding for '<<-' assignment to 'ae' iterative.testGUI : select.factor: no visible binding for global variable 'fact' iterative.testGUI : select.factor: no visible binding for global variable 'ae' iterative.testGUI : select.factor: no visible binding for global variable 'mat.binary' iterative.testGUI : select.factor: no visible binding for global variable 'mat.analyse' iterative.testGUI1: no visible binding for '<<-' assignment to 'a' iterative.testGUI1 : compute.iterative: no visible binding for '<<-' assignment to 'niv' iterative.testGUI1 : compute.iterative: no visible binding for global variable 'niv' iterative.testGUI1 : view.distribution: no visible binding for global variable 'a' iterative.testGUI1 : view.distribution: no visible binding for global variable 'niv' loadGUI: no visible binding for '<<-' assignment to 'filename' loadGUI: no visible binding for global variable 'filename' loadGUI: no visible binding for '<<-' assignment to 'mat.raw' loadGUI: no visible binding for global variable 'mat' loadGUI: no visible binding for global variable 'mat.raw' loadGUI: no visible binding for '<<-' assignment to 'mat.align' loadGUI: no visible binding for global variable 'mat1' loadGUI: no visible binding for global variable 'mat.align' loadGUI: no visible binding for '<<-' assignment to 'rxref' loadGUI: no visible binding for global variable 'rxref' loadGUI: no visible binding for '<<-' assignment to 'fact' loadGUI: no visible binding for global variable 'fact' loadGUI: no visible binding for '<<-' assignment to 'param' loadGUI: no visible binding for global variable 'param' loadGUI: no visible binding for '<<-' assignment to 'alig' loadGUI: no visible binding for global variable 'alig' loadGUI: no visible binding for '<<-' assignment to 'mat.background' loadGUI: no visible binding for global variable 'mat2' loadGUI: no visible binding for global variable 'mat.background' loadGUI: no visible binding for '<<-' assignment to 'mat.baseline' loadGUI: no visible binding for global variable 'mat3' loadGUI: no visible binding for global variable 'mat.baseline' loadGUI: no visible binding for '<<-' assignment to 'mat.range' loadGUI: no visible binding for global variable 'mat5' loadGUI: no visible binding for global variable 'mat.range' loadGUI: no visible binding for '<<-' assignment to 'mat.analyse' loadGUI: no visible binding for global variable 'mat6' loadGUI: no visible binding for global variable 'mat.analyse' loadGUI: no visible binding for '<<-' assignment to 'mat.normalise' loadGUI: no visible binding for global variable 'mat7' loadGUI: no visible binding for global variable 'mat.normalise' loadGUI: no visible binding for '<<-' assignment to 'mat.rebuilt' loadGUI: no visible binding for global variable 'mat8' loadGUI: no visible binding for global variable 'mat.rebuilt' loadGUI: no visible binding for '<<-' assignment to 'mat.binary' loadGUI: no visible binding for global variable 'mat9' loadGUI: no visible binding for global variable 'mat.binary' make.peakGUI: no visible binding for '<<-' assignment to 'mat.rebuilt' make.peakGUI: no visible binding for global variable 'mat.analyse' make.peakGUI: no visible binding for global variable 'mat.rebuilt' make.peakGUI: no visible binding for global variable 'mat.raw' make.peakGUI : compute.peak.modification: no visible binding for global variable 'mat.normalise' make.peakGUI : compute.peak.modification: no visible binding for '<<-' assignment to 'sel' make.peakGUI : compute.peak.modification: no visible binding for '<<-' assignment to 'ss' make.peakGUI : save.peak: no visible binding for global variable 'sel' make.peakGUI : save.peak: no visible binding for global variable 'ss' make.peakGUI : save.peak: no visible binding for global variable 'mat.raw' make.peakGUI : save.peak: no visible binding for '<<-' assignment to 'mat.analyse' mergeGUI : load.project: no visible binding for '<<-' assignment to 'mat.raw.1' mergeGUI : load.project: no visible binding for global variable 'mat.raw' mergeGUI : load.project: no visible binding for '<<-' assignment to 'mat.align.1' mergeGUI : load.project: no visible binding for global variable 'mat.align' mergeGUI : load.project: no visible binding for '<<-' assignment to 'rxref1' mergeGUI : load.project: no visible binding for global variable 'rxref' mergeGUI : load.project: no visible binding for '<<-' assignment to 'fact1' mergeGUI : load.project: no visible binding for global variable 'fact' mergeGUI : load.project: no visible binding for '<<-' assignment to 'param1' mergeGUI : load.project: no visible binding for global variable 'param' mergeGUI : load.project: no visible binding for '<<-' assignment to 'div1' mergeGUI : load.project: no visible binding for global variable 'div' mergeGUI : load.project: no visible binding for '<<-' assignment to 'alig1' mergeGUI : load.project: no visible binding for global variable 'alig' mergeGUI : load.project: no visible binding for '<<-' assignment to 'mat.raw.2' mergeGUI : load.project: no visible binding for '<<-' assignment to 'mat.align.2' mergeGUI : load.project: no visible binding for '<<-' assignment to 'rxref2' mergeGUI : load.project: no visible binding for '<<-' assignment to 'fact2' mergeGUI : load.project: no visible binding for '<<-' assignment to 'param2' mergeGUI : load.project: no visible binding for '<<-' assignment to 'div2' mergeGUI : load.project: no visible binding for '<<-' assignment to 'alig2' mergeGUI : merge: no visible binding for global variable 'rxref2' mergeGUI : merge: no visible binding for global variable 'rxref1' mergeGUI : merge: no visible binding for global variable 'fact1' mergeGUI : merge: no visible binding for global variable 'fact2' mergeGUI : merge: no visible binding for global variable 'param1' mergeGUI : merge: no visible binding for global variable 'param2' mergeGUI : merge: no visible binding for global variable 'mat.raw.1' mergeGUI : merge: no visible binding for global variable 'mat.raw.2' mergeGUI : merge: no visible binding for global variable 'mat.align.1' mergeGUI : merge: no visible binding for global variable 'mat.align.2' mergeGUI : merge: no visible binding for '<<-' assignment to 'mat.raw' mergeGUI : merge: no visible binding for global variable 'mat.raw' mergeGUI : merge: no visible binding for '<<-' assignment to 'mat.align' mergeGUI : merge: no visible binding for '<<-' assignment to 'rxref' mergeGUI : merge: no visible binding for '<<-' assignment to 'fact' mergeGUI : merge: no visible binding for global variable 'fact' mergeGUI : merge: no visible binding for '<<-' assignment to 'alig' mergeGUI : merge: no visible binding for global variable 'alig1' mergeGUI : merge: no visible binding for global variable 'alig2' mergeGUI : merge: no visible binding for '<<-' assignment to 'param' mergeGUI : merge: no visible binding for '<<-' assignment to 'div' mergeGUI : merge: no visible binding for global variable 'div1' mergeGUI : merge: no visible binding for global variable 'div2' mergeGUI : merge: no visible binding for global variable 'mat.align' mergeGUI : merge: no visible binding for '<<-' assignment to 'mat.analyse' normalisationGUI: no visible binding for global variable 'mat.baseline' normalisationGUI: no visible binding for global variable 'mat.range' normalisationGUI : compute.normalisation: no visible binding for global variable 'mat.range' normalisationGUI : compute.normalisation: no visible binding for '<<-' assignment to 'mat.analyse' normalisationGUI : compute.normalisation: no visible binding for '<<-' assignment to 'mat.normalise' pcaGUI : scree.plot: no visible binding for global variable 'mat.analyse' pcaGUI : compute.pca: no visible binding for global variable 'mat.analyse' pcaGUI : compute.pca: no visible binding for '<<-' assignment to 'pcaf' pcaGUI : compute.pca: no visible binding for '<<-' assignment to 'fact_temp' pcaGUI : compute.pca: no visible binding for global variable 'fact' pcaGUI : compute.pca: no visible binding for '<<-' assignment to 'param_temp' pcaGUI : compute.pca: no visible binding for global variable 'param' pcaGUI : save.pca: no visible binding for global variable 'pcaf' pcaGUI : save.pca: no visible binding for global variable 'fact_temp' pcaGUI : save.pca: no visible binding for global variable 'param_temp' permanovaGUI: no visible binding for global variable 'fact' permanovaGUI: no visible binding for '<<-' assignment to 'j' permanovaGUI : create.model: no visible binding for global variable 'j' permanovaGUI : create.model: no visible binding for '<<-' assignment to 'j' permanovaGUI : create.model: no visible binding for global variable 'fact' permanovaGUI : create.model: no visible binding for '<<-' assignment to 'ano2' permanovaGUI : compute.permanova: no visible binding for global variable 'ano2' permanovaGUI : compute.permanova: no visible binding for global variable 'fact' plot2dGUI: no visible binding for global variable 'mat.raw' plot2dGUI : plot2d: no visible binding for global variable 'mat.analyse' plot2dGUI : plot2d: no visible binding for global variable 'mat.raw' plot3dim: no visible binding for global variable 'myp' plot3dimGUI: no visible binding for '<<-' assignment to 'colorlut' plot3dimGUI: no visible binding for global variable 'mat.analyse' plot3dimGUI: no visible binding for '<<-' assignment to 'myp' plot3dimGUI : plot3d: no visible binding for global variable 'mat.analyse' plot3dimGUI : plot3d: no visible binding for global variable 'MainMenu' plotord3dGUI: no visible binding for global variable 'fact_temp' plotord3dGUI : plotord3d: no visible binding for global variable 'pcaf' plotord3dGUI : plotord3d: no visible binding for global variable 'fact_temp' plotordGUI: no visible binding for global variable 'mat.analyse' plotordGUI: no visible binding for global variable 'param_temp' plotordGUI: no visible binding for global variable 'fact_temp' plotordGUI : plotord: no visible binding for global variable 'pcaf' plotordGUI : plotord: no visible binding for '<<-' assignment to 'colo' plotordGUI : plotord: no visible binding for global variable 'fact' plotordGUI : plotord: no visible binding for '<<-' assignment to 'pche' plotordGUI : plotord : zz: no visible binding for '<<-' assignment to 'pche' plotordGUI : plotord: no visible binding for global variable 'colo' plotordGUI : plotord: no visible binding for global variable 'pche' pwanosimGUI: no visible binding for global variable 'fact' pwanosimGUI : pwanosimGUI1: no visible binding for global variable 'fact' pwanosimGUI : pwanosimGUI1: no visible binding for global variable 'ae' pwanosimGUI : pwanosimGUI1 : compute.pwanosim: no visible binding for global variable 'mat.binary' pwanosimGUI : pwanosimGUI1 : compute.pwanosim: no visible binding for global variable 'fact' pwanosimGUI : pwanosimGUI1 : compute.pwanosim: no visible binding for global variable 'ae' pwanosimGUI : pwanosimGUI1 : compute.pwanosim: no visible binding for global variable 'mat.analyse' pwanosimGUI : load.pwanosim: no visible binding for '<<-' assignment to 'ae' rdaGUI: no visible binding for global variable 'param' rdaGUI: no visible binding for global variable 'div' rdaGUI: no visible binding for global variable 'mat.analyse' rdaGUI: no visible binding for '<<-' assignment to 'mat.analyse.na' rdaGUI: no visible binding for '<<-' assignment to 'j' rdaGUI : create.model: no visible binding for global variable 'j' rdaGUI : create.model: no visible binding for '<<-' assignment to 'j' rdaGUI : create.model: no visible binding for '<<-' assignment to 'ano2' rdaGUI : compute.rda: no visible binding for global variable 'ano2' rdaGUI : stepwise.rda: no visible binding for global variable 'ano2' rdaGUI : partial.rda: no visible binding for global variable 'ano2' rdaGUI : plot.rda: no visible binding for global variable 'ano2' roxdefault: no visible binding for '<<-' assignment to 'rxref' roxdefault: no visible binding for global variable 'rxref' roxdefault: no visible binding for global variable 'MainMenu' roxnewGUI : define.new.rox: no visible binding for '<<-' assignment to 'roxref' roxnewGUI : define.new.rox : defroxref: no visible binding for global variable 'MainMenu' roxnewGUI : define.new.rox: no visible binding for global variable 'roxref' roxnewGUI : define.new.rox: no visible binding for '<<-' assignment to 'rxref' roxnewGUI : define.new.rox: no visible binding for global variable 'rxref' roxnewGUI : help.define.new.rox: no visible binding for global variable 'mat.raw' saveasGUI: no visible binding for global variable 'MainMenu' simperGUI: no visible binding for global variable 'fact' simperGUI : load.simper: no visible binding for '<<-' assignment to 'ae' simperGUI1: no visible binding for global variable 'fact' simperGUI1: no visible binding for global variable 'ae' simperGUI1 : compute.simper: no visible binding for global variable 'fact' simperGUI1 : compute.simper: no visible binding for global variable 'ae' simperGUI1 : compute.simper: no visible binding for global variable 'mat.analyse' simperGUI1 : compute.simper: no visible binding for '<<-' assignment to 'simper.data' simperGUI1 : export.simper: no visible binding for global variable 'simper.data' trunckGUI: no visible binding for global variable 'mat.align' trunckGUI: no visible binding for global variable 'mat.baseline' trunckGUI : define.range: no visible binding for global variable 'mat.baseline' waitGUI: no visible binding for '<<-' assignment to 'z' waitGUI: no visible binding for global variable 'z' withingroupvariability: no visible binding for global variable 'fact' withingroupvariability: no visible binding for global variable 'sel' withingroupvariabilityGUI: no visible binding for global variable 'fact' withingroupvariabilityGUI : compute.withingroupvariability: no visible binding for global variable 'mat.binary' withingroupvariabilityGUI : compute.withingroupvariability: no visible binding for global variable 'mat.analyse' withingroupvariabilityGUI : compute.withingroupvariability: no visible binding for global variable 'fact' Found possibly global 'T' or 'F' in the following functions: StatFingerprints best.nmds diversitiesGUI graphfactGUI roxnewGUI simperGUI1 * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking examples ... OK * checking PDF version of manual ... OK