* using log directory 'd:/Rcompile/CRANpkg/local/2.11/caspar.Rcheck' * using R version 2.11.1 Patched (2010-07-29 r52657) * using session charset: ISO8859-1 * checking for file 'caspar/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'caspar' version '1.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'caspar' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE demo.hiv: no visible binding for global variable 'HIVDAT1APV' demo.hiv: no visible binding for global variable 'HIVDAT2ATV' demo.hiv: no visible binding for global variable 'HIVDAT3IDV' demo.hiv: no visible binding for global variable 'HIVDAT4LPV' demo.hiv: no visible binding for global variable 'HIVDAT5NFV' demo.hiv: no visible binding for global variable 'HIVDAT6RTV' demo.hiv: no visible binding for global variable 'HIVDAT7SQV' * checking Rd files ... NOTE prepare_Rd: caspar-package.Rd:36-37: Dropping empty section \seealso prepare_Rd: caspar-package.Rd:38-39: Dropping empty section \examples prepare_Rd: caspar.engine.Rd:53-55: Dropping empty section \details prepare_Rd: caspar.engine.Rd:56-62: Dropping empty section \value prepare_Rd: caspar.engine.Rd:69-71: Dropping empty section \note prepare_Rd: caspar.engine.Rd:66-68: Dropping empty section \author prepare_Rd: caspar.engine.Rd:63-65: Dropping empty section \references prepare_Rd: caspar.engine.Rd:75-77: Dropping empty section \seealso prepare_Rd: caspar.engine.Rd:78-79: Dropping empty section \examples prepare_Rd: caspar.grid.Rd:44-46: Dropping empty section \details prepare_Rd: caspar.grid.Rd:47-53: Dropping empty section \value prepare_Rd: caspar.grid.Rd:60-62: Dropping empty section \note prepare_Rd: caspar.grid.Rd:57-59: Dropping empty section \author prepare_Rd: caspar.grid.Rd:54-56: Dropping empty section \references prepare_Rd: caspar.grid.Rd:66-68: Dropping empty section \seealso prepare_Rd: caspar.grid.Rd:69-70: Dropping empty section \examples prepare_Rd: caspar.main.Rd:65-67: Dropping empty section \note prepare_Rd: caspar.main.Rd:62-64: Dropping empty section \author prepare_Rd: caspar.main.Rd:59-61: Dropping empty section \references prepare_Rd: caspar.main.Rd:71-73: Dropping empty section \seealso prepare_Rd: casparCV.Rd:49-51: Dropping empty section \details prepare_Rd: casparCV.Rd:52-58: Dropping empty section \value prepare_Rd: casparCV.Rd:65-67: Dropping empty section \note prepare_Rd: casparCV.Rd:62-64: Dropping empty section \author prepare_Rd: casparCV.Rd:59-61: Dropping empty section \references prepare_Rd: casparCV.Rd:71-73: Dropping empty section \seealso prepare_Rd: casparCV.Rd:74-75: Dropping empty section \examples prepare_Rd: col2cov.Rd:23-25: Dropping empty section \details prepare_Rd: col2cov.Rd:26-32: Dropping empty section \value prepare_Rd: col2cov.Rd:39-41: Dropping empty section \note prepare_Rd: col2cov.Rd:36-38: Dropping empty section \author prepare_Rd: col2cov.Rd:33-35: Dropping empty section \references prepare_Rd: col2cov.Rd:45-47: Dropping empty section \seealso prepare_Rd: col2cov.Rd:48-49: Dropping empty section \examples prepare_Rd: cov2grid.Rd:23-25: Dropping empty section \details prepare_Rd: cov2grid.Rd:26-32: Dropping empty section \value prepare_Rd: cov2grid.Rd:39-41: Dropping empty section \note prepare_Rd: cov2grid.Rd:36-38: Dropping empty section \author prepare_Rd: cov2grid.Rd:33-35: Dropping empty section \references prepare_Rd: cov2grid.Rd:45-47: Dropping empty section \seealso prepare_Rd: cov2grid.Rd:48-49: Dropping empty section \examples prepare_Rd: demo.caspar.Rd:15-17: Dropping empty section \details prepare_Rd: demo.caspar.Rd:18-24: Dropping empty section \value prepare_Rd: demo.caspar.Rd:31-33: Dropping empty section \note prepare_Rd: demo.caspar.Rd:28-30: Dropping empty section \author prepare_Rd: demo.caspar.Rd:25-27: Dropping empty section \references prepare_Rd: demo.caspar.Rd:37-39: Dropping empty section \seealso prepare_Rd: demo.hiv.Rd:39-41: Dropping empty section \note prepare_Rd: demo.hiv.Rd:36-38: Dropping empty section \author prepare_Rd: demo.hiv.Rd:33-35: Dropping empty section \references prepare_Rd: demo.hiv.Rd:45-47: Dropping empty section \seealso prepare_Rd: simulateCasparData.Rd:53-55: Dropping empty section \details prepare_Rd: simulateCasparData.Rd:56-62: Dropping empty section \value prepare_Rd: simulateCasparData.Rd:69-71: Dropping empty section \note prepare_Rd: simulateCasparData.Rd:66-68: Dropping empty section \author prepare_Rd: simulateCasparData.Rd:63-65: Dropping empty section \references prepare_Rd: simulateCasparData.Rd:75-77: Dropping empty section \seealso * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $BLAS_LIBS ... OK * checking examples ... OK * checking PDF version of manual ... OK