* using log directory 'd:/Rcompile/CRANpkg/local/2.11/geiger.Rcheck' * using R version 2.11.1 Patched (2010-07-29 r52657) * using session charset: ISO8859-1 * checking for file 'geiger/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'geiger' version '1.3-1' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'geiger' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking whether the name space can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: getAncStates.Rd:29: Dropping empty section \references prepare_Rd: medusa.Rd:60-62: Dropping empty section \seealso prepare_Rd: prune.extinct.taxa.Rd:21-22: Dropping empty section \details prepare_Rd: prune.extinct.taxa.Rd:26: Dropping empty section \references prepare_Rd: rate.estimate.Rd:36-37: Dropping empty section \details prepare_Rd: sim.char.Rd:35: Dropping empty section \references prepare_Rd: tip.disparity.Rd:16-17: Dropping empty section \details * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking data for non-ASCII characters ... OK * checking examples ... OK * checking PDF version of manual ... OK