* using log directory 'd:/Rcompile/CRANpkg/local/2.11/glmmBUGS.Rcheck' * using R version 2.11.1 Patched (2010-07-29 r52657) * using session charset: ISO8859-1 * checking for file 'glmmBUGS/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'glmmBUGS' version '1.9' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'glmmBUGS' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking whether the name space can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: addSpatial.Rd:69: Dropping empty section \keyword prepare_Rd: addSpatial.Rd:32: Dropping empty section \seealso prepare_Rd: binToBinom.Rd:16-17: Dropping empty section \details prepare_Rd: binToBinom.Rd:26-27: Dropping empty section \note prepare_Rd: binToBinom.Rd:24: Dropping empty section \references prepare_Rd: binToBinom.Rd:28: Dropping empty section \seealso prepare_Rd: checkChain.Rd:22: Dropping empty section \note prepare_Rd: checkChain.Rd:20: Dropping empty section \references prepare_Rd: cholInvArray.Rd:57: Dropping empty section \keyword prepare_Rd: cholInvArray.Rd:28-29: Dropping empty section \note prepare_Rd: cholInvArray.Rd:27: Dropping empty section \author prepare_Rd: cholInvArray.Rd:26: Dropping empty section \references prepare_Rd: cholInvArray.Rd:30: Dropping empty section \seealso prepare_Rd: getRaggedSeq.Rd:15-17: Dropping empty section \details prepare_Rd: getRaggedSeq.Rd:23-24: Dropping empty section \note prepare_Rd: getRaggedSeq.Rd:21: Dropping empty section \references prepare_Rd: getRaggedSeq.Rd:26-27: Dropping empty section \examples prepare_Rd: glmmPQLstrings.Rd:30: Dropping empty section \note prepare_Rd: glmmPQLstrings.Rd:28: Dropping empty section \references prepare_Rd: muscleResult.Rd:15-17: Dropping empty section \source prepare_Rd: muscleResult.Rd:18-20: Dropping empty section \references prepare_Rd: popDataAdjMat.Rd:9-10: Dropping empty section \format prepare_Rd: popDataAdjMat.Rd:16-18: Dropping empty section \source prepare_Rd: popDataAdjMat.Rd:19-21: Dropping empty section \references prepare_Rd: restoreParams.Rd:17-18: Dropping empty section \details prepare_Rd: restoreParams.Rd:33: Dropping empty section \references prepare_Rd: restoreParams.Rd:42-44: Dropping empty section \examples prepare_Rd: startingFunction.Rd:27: Dropping empty section \note prepare_Rd: startingFunction.Rd:25: Dropping empty section \references prepare_Rd: summaryChain.Rd:16-18: Dropping empty section \details prepare_Rd: summaryChain.Rd:27-28: Dropping empty section \note prepare_Rd: summaryChain.Rd:25: Dropping empty section \references prepare_Rd: winBugsRaggedArray.Rd:39: Dropping empty section \note prepare_Rd: writeBugsModel.Rd:59-61: Dropping empty section \note prepare_Rd: writeBugsModel.Rd:65-67: Dropping empty section \seealso * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking data for non-ASCII characters ... OK * checking examples ... OK * checking PDF version of manual ... OK