* using log directory 'd:/Rcompile/CRANpkg/local/2.11/lemma.Rcheck' * using R version 2.11.0 (2010-04-22) * using session charset: ISO8859-1 * checking for file 'lemma/DESCRIPTION' ... OK * this is package 'lemma' version '1.3-1' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'lemma' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking whether the name space can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE lemmaPlots: no visible binding for global variable 'G' lemmaPlots: no visible binding for global variable 'dg' lemmaPlots: no visible binding for global variable 'n2' lemmaPlots: no visible binding for global variable 'n1' lemmaPlots: no visible binding for global variable 'p0' lemmaPlots: no visible binding for global variable 'tau' lemmaPlots: no visible binding for global variable 'sig2eb' lemmaPlots: no visible binding for global variable 'p1' lemmaPlots: no visible binding for global variable 'psi' lemmaPlots: no visible binding for global variable 'sig2psi' lemmaPlots: no visible binding for global variable 'p2' lemmaPlots: no visible binding for global variable 'mg' lemmaPlots: no visible binding for global variable 'f' lemmaPlots: no visible binding for global variable 'alpha_hat' lemmaPlots: no visible binding for global variable 'beta_hat' lemmaPlots: no visible binding for global variable 'pBH0' lemmaPlots: no visible binding for global variable 'RRfdr0' lemmaPlots: no visible binding for global variable 'genename' saveAsCsv: no visible binding for global variable 'dg' saveAsCsv: no visible binding for global variable 'pBH0' saveAsCsv: no visible binding for global variable 'RRfdr0' saveAsCsv: no visible binding for global variable 'RRfdr1' saveAsCsv: no visible binding for global variable 'RRfdr2' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking data for non-ASCII characters ... OK * checking examples ... OK * checking PDF version of manual ... OK