* using log directory 'd:/Rcompile/CRANpkg/local/2.11/xpose4specific.Rcheck' * using R version 2.11.1 Patched (2010-07-29 r52657) * using session charset: ISO8859-1 * checking for file 'xpose4specific/DESCRIPTION' ... OK * this is package 'xpose4specific' version '4.3.2' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'xpose4specific' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking whether the name space can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE absval.dcwres.vs.cov.model.comp: no visible binding for global variable '.ref.db' absval.dipred.vs.cov.model.comp: no visible binding for global variable '.ref.db' absval.diwres.vs.cov.model.comp: no visible binding for global variable '.ref.db' absval.dpred.vs.cov.model.comp: no visible binding for global variable '.ref.db' absval.dwres.vs.cov.model.comp: no visible binding for global variable '.ref.db' add.model.comp: no visible binding for global variable '.ref.db' add.model.comp.cwres: no visible binding for global variable '.ref.db' basic.model.comp: no visible binding for global variable '.ref.db' basic.model.comp.cwres: no visible binding for global variable '.ref.db' cat.dv.vs.idv.sb: no visible binding for global variable 'levs' check.gamobj: no visible binding for global variable 'current.gam' ind.plots: no visible binding for global variable 'bin' ind.plots.cwres.hist: no visible binding for global variable 'bin' ind.plots.cwres.qq: no visible binding for global variable 'bin' ind.plots.wres.hist: no visible binding for global variable 'bin' ind.plots.wres.qq: no visible binding for global variable 'bin' kaplan.plot: no visible binding for global variable 'd' npc.coverage : myPanel: no visible binding for global variable 'outside.PI' runsum: no visible binding for global variable 'seenterm' runsum: no visible binding for global variable 'term' runsum: no visible binding for global variable 'seenobj' runsum: no visible binding for global variable 'ofv' runsum: no visible binding for global variable 'parnam' runsum: no visible binding for global variable 'parval' runsum: no visible binding for global variable 'seenseth' runsum: no visible binding for global variable 'seenseom' runsum: no visible binding for global variable 'seensesi' runsum: no visible binding for global variable 'separval' runsum.old: no visible binding for global variable 'seenterm' runsum.old: no visible binding for global variable 'term' runsum.old: no visible binding for global variable 'seenobj' runsum.old: no visible binding for global variable 'ofv' runsum.old: no visible binding for global variable 'seenseth' runsum.old: no visible binding for global variable 'seenseom' runsum.old: no visible binding for global variable 'seensesi' runsum.old: no visible binding for global variable 'npar' tabulate.parameters: no visible binding for global variable 'separval' tabulate.parameters: no visible binding for global variable 'parval' tabulate.parameters: no visible binding for global variable 'parnam' xp.akaike.plot: no visible binding for global variable 'current.gam' xp.ind.inf.fit: no visible binding for global variable 'current.gam' xp.ind.inf.terms: no visible binding for global variable 'current.gam' xp.ind.stud.res: no visible binding for global variable 'current.gam' xp.plot: no visible binding for global variable 'current.gam' xp.scope3: no visible binding for global variable 'covnams' xp.summary: no visible binding for global variable 'current.gam' * checking Rd files ... NOTE prepare_Rd: cat.dv.vs.idv.sb.Rd:140-141: Dropping empty section \details prepare_Rd: cat.dv.vs.idv.sb.Rd:142-143: Dropping empty section \value prepare_Rd: cat.dv.vs.idv.sb.Rd:149-150: Dropping empty section \note prepare_Rd: cat.dv.vs.idv.sb.Rd:144-145: Dropping empty section \references prepare_Rd: cat.dv.vs.idv.sb.Rd:152-153: Dropping empty section \seealso prepare_Rd: cat.pc.Rd:76-77: Dropping empty section \details prepare_Rd: cat.pc.Rd:78-79: Dropping empty section \value prepare_Rd: cat.pc.Rd:85-86: Dropping empty section \note prepare_Rd: cat.pc.Rd:80-81: Dropping empty section \references prepare_Rd: cat.pc.Rd:88-89: Dropping empty section \seealso prepare_Rd: cwres.wres.vs.idv.Rd:76-77: Dropping empty section \note prepare_Rd: dOFV.vs.cov.Rd:61-62: Dropping empty section \details prepare_Rd: dOFV.vs.cov.Rd:63-64: Dropping empty section \value prepare_Rd: dOFV.vs.cov.Rd:70-71: Dropping empty section \note prepare_Rd: dOFV.vs.cov.Rd:65-66: Dropping empty section \references prepare_Rd: dOFV.vs.cov.Rd:73-74: Dropping empty section \seealso prepare_Rd: dOFV.vs.id.Rd:98-99: Dropping empty section \details prepare_Rd: dOFV.vs.id.Rd:100-101: Dropping empty section \value prepare_Rd: dOFV.vs.id.Rd:107-108: Dropping empty section \note prepare_Rd: dOFV.vs.id.Rd:102-103: Dropping empty section \references prepare_Rd: dOFV.vs.id.Rd:110-111: Dropping empty section \seealso prepare_Rd: dOFV1.vs.dOFV2.Rd:68-69: Dropping empty section \details prepare_Rd: dOFV1.vs.dOFV2.Rd:70-71: Dropping empty section \value prepare_Rd: dOFV1.vs.dOFV2.Rd:78-79: Dropping empty section \note prepare_Rd: dOFV1.vs.dOFV2.Rd:72-74: Dropping empty section \references prepare_Rd: dOFV1.vs.dOFV2.Rd:81-82: Dropping empty section \seealso prepare_Rd: data.checkout.Rd:77-78: Dropping empty section \note prepare_Rd: dist.hist.Rd:75-76: Dropping empty section \note prepare_Rd: dist.qq.Rd:76-77: Dropping empty section \note prepare_Rd: kaplan.plot.Rd:182-183: Dropping empty section \details prepare_Rd: kaplan.plot.Rd:192-193: Dropping empty section \note prepare_Rd: kaplan.plot.Rd:187-188: Dropping empty section \references prepare_Rd: npc.coverage.Rd:132-133: Dropping empty section \details prepare_Rd: npc.coverage.Rd:139-140: Dropping empty section \note prepare_Rd: npc.coverage.Rd:137: Dropping empty section \references prepare_Rd: runsum.print.Rd:152-153: Dropping empty section \details prepare_Rd: runsum.print.Rd:158-159: Dropping empty section \seealso prepare_Rd: splom.Rd:102-103: Dropping empty section \note prepare_Rd: summary.Rd:82-83: Dropping empty section \details prepare_Rd: summary.Rd:95-96: Dropping empty section \note prepare_Rd: tabulate.parameters.Rd:41-42: Dropping empty section \details prepare_Rd: tabulate.parameters.Rd:47-48: Dropping empty section \note prepare_Rd: tabulate.parameters.Rd:49-50: Dropping empty section \seealso prepare_Rd: xpose.VPC.Rd:297-298: Dropping empty section \details prepare_Rd: xpose.VPC.Rd:304-305: Dropping empty section \note prepare_Rd: xpose.VPC.Rd:302: Dropping empty section \references prepare_Rd: xpose.VPC.both.Rd:66-67: Dropping empty section \details prepare_Rd: xpose.VPC.both.Rd:68-69: Dropping empty section \value prepare_Rd: xpose.VPC.both.Rd:75-76: Dropping empty section \note prepare_Rd: xpose.VPC.both.Rd:70-71: Dropping empty section \references prepare_Rd: xpose.VPC.categorical.Rd:128-129: Dropping empty section \details prepare_Rd: xpose.VPC.categorical.Rd:130-131: Dropping empty section \value prepare_Rd: xpose.VPC.categorical.Rd:137-138: Dropping empty section \note prepare_Rd: xpose.VPC.categorical.Rd:132-133: Dropping empty section \references prepare_Rd: xpose.gam.Rd:119-120: Dropping empty section \note prepare_Rd: xpose.gam.Rd:117: Dropping empty section \references prepare_Rd: xpose.license.citation.Rd:35-36: Dropping empty section \arguments prepare_Rd: xpose.license.citation.Rd:37-38: Dropping empty section \details prepare_Rd: xpose.license.citation.Rd:43-44: Dropping empty section \note prepare_Rd: xpose.license.citation.Rd:45-46: Dropping empty section \seealso * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking examples ... OK * checking PDF version of manual ... OK