Bayesian Model Search and Multilevel Inference for SNP Association Studies


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Documentation for package ‘MISA’ version 2.11.1-1.0.1

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MISA-package Multilevel Inference for SNP Association Studies
AIC.prior Families of Prior Distribution for Coefficients in BMA Models
aic.prior Families of Prior Distribution for Coefficients in BMA Models
bf4assoc Bayes Factors for 3 Association Models: Marginal SNP Screen
BIC.prior Families of Prior Distribution for Coefficients in BMA Models
bic.prior Families of Prior Distribution for Coefficients in BMA Models
combine.EMC Calculates Global and Marginal Summaries
converge.EMC Convergence Diagnostic Plots for Genetic EMC
crossover EMC: Crossover Step
data.snp Data: Genetic Parametrization
dna.snp Simulated Example SNP data set.
dna.snp.full Simulated Example SNP data set.
emc.converge Convergence Diagnostic Plots for Genetic EMC
emc.out.1 Example Output I from the Genetic EMC algorithm
emc.out.2 Example Output II from the Genetic EMC algorithm
exchange EMC: Exchange Step
expand.data.snp Data: Genetic Parametrization
fit EMC: Fitness Function
fit.EMC EMC: Fitness Function
Gene.EMC Bayesian Model Search Algorithm for Case-Control Genetic Association Studies
IC.prior Families of Prior Distribution for Coefficients in BMA Models
MISA Multilevel Inference for SNP Association Studies
model.inc Image Plots for top SNP and Gene Inclusions
mutation EMC: Mutation Step
post.prob Calculates Global and Marginal Summaries
sim.info Associated Tag SNPs for Simulation