Tools for mapping of quantitative traits of genetically related individuals and calculating identity coefficients from a pedigree


[Up] [Top]

Documentation for package ‘QTLRel’ version 0.2-9

Help Pages

aicVC AIC Model Selection
blup Best Linear Unbiased Prediction
cic Calculate Jacquard condensed identity coefficients
estVC Estimate Variance Component Parameters
fv A collection of other functions.
gdat Pedigree, genotype data and genetic map.
genMap Pedigree, genotype data and genetic map.
genMapF34 Pedigree, genotype data and genetic map.
genMatrix Derive genetic matrices
genoImpute Impute Genotypic Data
genoPos A collection of other functions.
genoProb Probability of a Genotype.
genoSim Generate Genotypic Data
gls Generalized Least Squares Estimates
gvar A collection of other functions.
hapSim Generate Genotypic Data
ibs Estimate Jacquard condensed identity coefficients
kinship Calculate kinship coefficients
lodci Estimate LOD Support Intervals
mAIC Multiple QTL AIC
mAIC.HK Multiple QTL AIC
miscEx Pedigree, genotype data and genetic map.
nullSim Simulate null distribution
ped Pedigree, genotype data and genetic map.
pedRecode Recode a Pedigree
pkolm A collection of other functions.
plot Plotting
plot.scanOne Plotting
plot.scanTwo Plotting
plotit Plotting
qkolm A collection of other functions.
qqPlot Quantile-Quantile Plots
qtlVar QTL Variance
rem Random effect matrices
scanOne Genome Scan for QTL
scanTwo Genome Scan for Epistasis
v Pedigree, genotype data and genetic map.
x Pedigree, genotype data and genetic map.
y Pedigree, genotype data and genetic map.