colGxE |
Genotypic TDT for Gene-Environment Interactions |
colGxEPerms |
Genotypic TDT for Gene-Environment Interactions |
colMAFtrio |
Remove SNPs or Trios |
colTDT |
Genotypic TDT |
colTDT2way |
Genotypic TDT for Two-Way Interactions |
colTDTebam |
SAM and EBAM for Trio Data |
colTDTinter2way |
Genotypic TDT for Two-Way Interactions |
colTDTmaxStat |
Maximum Genotypic TDT |
colTDTmaxTest |
Maximum Genotypic TDT |
colTDTsam |
SAM and EBAM for Trio Data |
compPermTDT2way |
Permutation-Based gTDT for Two-Way Interactions |
fastGxG |
Genotypic TDT for Two-Way Interactions |
fastGxGrec |
Genotypic TDT for Two-Way Interactions |
findLDblocks |
Identifying LD blocks |
freq.hap |
Case-Parent Trio Data |
getLD |
Computation of LD Measures |
gtdt.ebam |
SAM and EBAM for Trio Data |
gtdt.stat |
SAM and EBAM for Trio Data |
LDdata |
Case-Parent Trio Data |
mat |
Computation of LD Measures |
mat.test |
Case-Parent Trio Data |
orderSNPs |
Remove SNPs or Trios |
ped2geno |
Transformation of Ped-File |
plot.getLD |
Plotting a getLD Object |
plot.LDblocks |
Plotting a LDblock Object |
poly4root |
Roots of a Fourth Degree Polynomial |
poly4rootMat |
Roots of a Fourth Degree Polynomial |
print.colGxE |
Genotypic TDT for Gene-Environment Interactions |
print.colTDT |
Genotypic TDT |
print.colTDTepi |
Genotypic TDT for Two-Way Interactions |
print.LDblock |
Identifying LD blocks |
print.maxScoreTrio |
Score Tests for SNPs, GxE, and GxG Interactions |
print.maxStatTrio |
Maximum Genotypic TDT |
print.maxTestTrio |
Maximum Genotypic TDT |
print.scoreGxE |
Score Tests for SNPs, GxE, and GxG Interactions |
print.scoreTDT |
Score Tests for SNPs, GxE, and GxG Interactions |
print.tdt |
Genotypic TDT |
print.tdtEpi |
Genotypic TDT for Two-Way Interactions |
read.pedfile |
Reading a Ped File |
removeSNPs |
Remove SNPs or Trios |
removeTrios |
Remove SNPs or Trios |
scoreGxE |
Score Tests for SNPs, GxE, and GxG Interactions |
scoreGxG |
Score Tests for SNPs, GxE, and GxG Interactions |
scoreMaxStat |
Score Tests for SNPs, GxE, and GxG Interactions |
scoreTDT |
Score Tests for SNPs, GxE, and GxG Interactions |
simuBkMap |
Case-Parent Trio Data |
splitBlocks |
Identifying LD blocks |
step3way |
Case-Parent Trio Data |
tdt |
Genotypic TDT |
tdt2way |
Genotypic TDT for Two-Way Interactions |
trio |
Generate Trio Data Format Suitable for Trio Logic Regression |
trio.check |
Check Case-Parent Trio Data for Mendelian Errors |
trio.data |
Case-Parent Trio Data |
trio.gen.err |
Case-Parent Trio Data |
trio.gen1 |
Case-Parent Trio Data |
trio.gen2 |
Case-Parent Trio Data |
trio.ped.err |
Case-Parent Trio Data |
trio.ped1 |
Case-Parent Trio Data |
trio.ped2 |
Case-Parent Trio Data |
trio.permTest |
Permutation Tests for Trio Logic Regression |
trio.sim |
Simulate Case-Parent Trios |