Tuned Data Mining in R


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Documentation for package ‘TDMR’ version 0.2.0

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TDMR-package Tuned Data Mining in R
bfgsTuner Perform BFGS tuning.
bind_response Bind the column with name response...
cat1 Output the objects to cat if opts$VERBOSE>=1.
cat2 Output the objects to cat if opts$VERBOSE>=2.
cmaesTuner Perform CMA-ES tuning.
cma_jTuner Perform CMA-ES tuning.
dsetTrnVa.TDMdata Return the train-validation part of a TDMdata object containing the task data.
lhdTuner Perform LHD tuning.
makeTdmRandomSeed Factory method to make a function generating pseudo-random random number seeds.
powellTuner Perform Powell's tuning.
print.tdmClass Print an overview for a tdmClass object.
print.TDMclassifier Print an overview for a TDMclassifier object.
print.tdmRegre Print an overview for a tdmRegre object.
print.TDMregressor Print an overview for a TDMregressor object.
print1 Prints the objects using print if opts$VERBOSE>=1.
print2 Prints the objects using print if opts$VERBOSE>=2.
spotTuner Perform a SPOT tuning.
tdmClassify Core classification function of TDMR.
tdmClassifyLoop Core classification double loop of TDMR.
tdmClassifySummary Print summary output for result from tdmClassifiyLoop and add result$y.
tdmCompleteEval Tuning and unbiased evaluation in a big loop.
tdmDefaultsFill Default values for list tdm.
tdmDispatchTuner Helper function for tdmCompleteEval.
tdmEmbedDataFrame Embed columns in a data frame...
tdmGraAndLogFinalize Finalize graphics and log file...
tdmGraAndLogInitialize Initialize graphics and log file.
tdmGraphicCloseDev Close all open graphic devices.
tdmGraphicCloseWin Close active file ("png").
tdmGraphicInit Initialize graphic device.
tdmGraphicNewWin Initialize a new window.
tdmMapDesApply Apply the mapping from des to opts.
tdmMapDesLoad Load the mapping files.
tdmModConfmat Calculate confusion matrix and gain (used by tdmClassify)...
tdmModCreateCVindex Create and return a training-test-set index vector.
tdmModSortedRFimport Sort the input variables decreasingly by their RF-importance.
tdmModVote2Target Analyze how the vote fraction corresponds to reliability of prediction...
tdmOptsDefaultsFill Fill the current opts.
tdmOptsDefaultsSet Default values for list opts.
tdmParaBootstrap Parametric bootstrap: add 'noisy copies' to a data frame (training data).
tdmPreAddMonomials Add monomials of degree 2 to a data frame...
tdmPreFindConstVar Find constant columns.
tdmPreGroupLevels Group the levels of factor variable in dset[,colname]...
tdmPreLevel2Target Relate levels of a column with a target (column).
tdmPrePCA.apply Apply PCA (Principal Component Analysis) to new data.
tdmPrePCA.train PCA (Principal Component Analysis) for numeric columns in a data frame.
tdmPreSFA.apply Apply SFA (Slow Feature Analysis) to new data.
tdmPreSFA.train SFA (Slow Feature Analysis) for numeric columns in a data frame.
TDMR Tuned Data Mining in R
tdmRandomSeed Generates pseudo-random random number seeds.
tdmReadData Read the data accoroding to the settings in opts.
tdmRegress Core regression function of TDMR.
tdmRegressLoop Core regression double loop of TDMR.
tdmRegressSummary Print summary output for result from tdmRegressLoop and add result$y.
tdmSplitTestData Read and split the task data.
tdmStartSpot Start a tuning evaluation of a DM task for SPOT tuner...
unbiasedBestRun_O Perform unbiased runs with best-solution parameters (optimization).
unbiasedRun Perform unbiased runs with best-solution parameters.