EM Estimation of Malaria Haplotype Probabilities from Multiply Infected Human Blood Samples


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Documentation for package ‘malaria.em’ version 1.0

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findCandidatesForAllGenotypes EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
findHaplotypeCandidateOneGenotype EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
funOfLambda EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
genAllHaploSetList EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
genAllHaploSetList.C EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
genAllHaploSetList.c EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
genAllHaploSetList.C.alldata EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
genAllHaploSetList.c.i EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
genAllHaploSetListForOneGenotype EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
geno EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getAllCoefficientQij.C EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getallConfig.C EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getAllHaplotypes EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getAllQij.C EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getAllScore.C.em EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getallWeight.C.em EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getCoefficientQij.C EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getDesignforAllGenotypes.additive.allhaplotype EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getDesignforOneGenotype.additive EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getDesignforOneGenotype.additive.allhaplotype EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getHaplotypesWithLoci EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getLocitypeFromOneGenotype EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getNextHaploSet EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getNextIndex EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getoneHaploSet.vector.C EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getOneHaplotype EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getoneL.C.em EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getOneNumset.C EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getOneQij.C EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getoneQij.vector.C EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getOneScore.C.em EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getOneScore.haplotype.em EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getoneWeight.C.em EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getStd.em EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getUniqueGenotype EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getUniqueGenotypeCount EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
getVector.C EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
Ginv EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
haploSet2Genotype EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
isLastSet EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
logL EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
malaria.em EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
newton.glm EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
num.unique.allele EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
num.unique.allele.locus EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
print.malaria.em EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
sortGenotypes EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples
toGenotypes EM Estimation of Malaria Haplotype Probabilities and Number of Infections from Multiply Infected Human Blood Samples