Modern measures of population differentiation


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Documentation for package ‘mmod’ version 0.2.1

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"mmod-package" Modern Measures of Divergence
chao_bootstrap Produce bootstrap samples from each subpopulation of a genind object
diff_stats Calculate differentiation statistics for a genind objects
diff_test An exact test of population differentiation for Genind objects
D_Jost Calculate Jost's D
Gst_Hedrick Calculate Nei's Gst using estimators for Hs and Ht
Gst_Nei Calculate Nei's Gst using estimators for Hs and Ht
harmonic_mean Harmonic mean
jacknife_populations Calculate differentiation stats for a jacknife sample of a Genind opject
mmod Modern Measures of Divergence
pairwise_D Calculates pairwise values of Jost's D
pairwise_Gst_Hedrick Calculates pairwise values of Hedrick's G'st
pairwise_Gst_Nei Calculates pairwise values of Nei's Gst
rgenotypes Randomly create genotypes
summarise_bootsrap Apply a differentiation statistic to a bootstrap sample