anoles | The anoles data set |
convert | toggles between ouch and ape format trees |
fitContinuous_object | wrapper for fitContinuous |
format_data | format data in ape format into ouch format |
mrcaOUCH | Finds the most recent common ancestor on an OUCH formatted tree |
paintBranches | Paints branches with regimes changing at nodes specified |
plot.pmc | plot the distributions |
plot_pars | plot the parameter distributions |
pmc | Performs a phylogenetic monte carlo between modelA and modelB |
pmc_fit | Fit any model used in PMC |
simulate.fitContinuous | simulate method |
tree | The phylogeny for the anoles data set |
treepalette | flexible regime coloring for trees |
treepower | function to create the power curve for a tree |
update.fitContinuous | update a fitContinuous model |