Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP

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Documentation for package ‘HMP’ version 1.1

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Barchart.data A Graphical Representation of Taxa Proportions
C.alpha.multinomial C(alpha) - Optimal Test for Assessing Multinomial Goodness of Fit Versus Dirichlet-Multinomial Alternative
Data.filter A Data Filter
Dirichlet.multinomial Generation of Dirichlet-Multinomial Random Samples
DM.MoM Method-of-Moments (MoM) Estimators of the Dirichlet-Multinomial Parameters
MC.Xdc.statistics Size and Power for the Several-Sample DM Parameter Test Comparison
MC.Xmc.statistics Size and Power of Several Sample RAD-Probability Mean Test Comparison
MC.Xmcupo.statistics Size and Power of Several Sample RAD-Probability Mean Test Comparisons: Unknown Vector of Proportion
MC.Xoc.statistics Size and Power of Several Sample-Overdispersion Test Comparisons
MC.Xsc.statistics Size and Power for the One Sample RAD Probability-Mean Test Comparison
MC.ZT.statistics Size and Power of Goodness of Fit Test: Multinomial vs. Dirichlet-Multinomial
Multinomial Generation of Multinomial Random Samples
saliva Saliva Data Set
throat Throat Data Set
tongue Tongue Data Set
tonsils Palatine Tonsil Data Set
Xdc.sevsample Likelihood-Ratio-Test Statistics: Several Sample Dirichlet-Multinomial Test Comparison
Xmc.sevsample Generalized Wald-type Statistics: Several sample RAD probability-mean test comparison with known common vector.
Xmcupo.sevsample Generalized Wald-type Statistics: Several sample RAD probability-mean test comparison with unknown common vector.
Xoc.sevsample Likelihood-Ratio-Test Statistics: Several Sample Overdispersion Test Comparison
Xsc.onesample Generalized Wald-Type Statistics: One Sample RAD Probability-Mean Test Comparison