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| MCPerm-package | A Monte Carlo permutation method for multiple test correction in case/control association study |
| Armitage | Armitage's trend test for the 2x3 genotype table |
| Armitage.MCPerm | A Monte Carlo permutation method for Armitage's trend test in case/control association study |
| Armitage.TradPerm | A permutation method for Armitage's trend test in case/control association study |
| chisq.MCPerm | A Monte Carlo permutation method for multiple chisq.test correction in case/control association study |
| chisq.TradPerm | A permutation test for multiple chisq.test correction in case/control association study |
| exampleData | Data Example from GWA16 |
| fisher.MCPerm | A Monte Carlo permutation method for multiple fisher.test correction in case/control association study |
| fisher.TradPerm | A permutation test for multiple fisher.test correction in case/control association study |
| genotypeStat | Statistical Allele and Genotype Frequency of the specified snp |
| MCPerm | A Monte Carlo permutation method for multiple test correction in case/control association study |
| OR | OR(odd ratio) for risk_allele |
| OR.MCPerm | A Monte Carlo permutation method for multiple OR(odd ratio) test correction in case/control association study |
| OR.TradPerm | A permutation test for multiple OR(odd ratio) test correction in case/control association study |
| permuteData | Permute the elements of a matrix |
| permuteGenotype | Fill the numerics of 2*3 table when fixed the row and column totals |