AutoPamGeneMix | Simultaneously Fitting Semi-Parametric Mixed Models to PamChip Data |
CleanedPamData | "CleanedPamData" |
CleanedPamData-class | "CleanedPamData" |
CleanedPeptide | "CleanedPeptide" |
CleanedPeptide-class | "CleanedPeptide" |
ObservedCellProfiles | Observed Cell Line Specific Profiles |
ObservedGroupProfiles | Observed Group Specific Profiles |
ObservedRepProfiles | Observed replicate specific profiles |
PamChipAllPepResults | "PamChipAllPepResults" |
PamChipAllPepResults-class | "PamChipAllPepResults" |
PamChipData | PamChip Microarray Data |
PamChipMixed | "PamChipMixed" |
PamChipMixed-class | "PamChipMixed" |
PamChipMixed-method | "PamChipMixed" |
PamGeneMix | Fitting Semi-Parametric Mixed Models to PamChip Data |
PreProcessAllPeptides | Pre-processing PamChip Array data |
PreProcessPam | Pre-processing Cell Line specific data for a given Peptide |
show-method | "CleanedPamData" |
show-method | "CleanedPeptide" |
show-method | "PamChipAllPepResults" |
show-method | "PamChipMixed" |
summary-method | Summarize Fitted Gamm Object for a given Peptide |
TestPepModelData | PamChip Peptide Specific Cleaned Data |
testVarCom | Wald Test to check variances are equal or not |
VisualizePamGeneMix | Visualize PamGeneMix Output Objects |
VolcanoPam | Visualize Output Object from AutoPamGeneMix |