* using log directory 'd:/Rcompile/CRANpkg/local/2.14/BiomarkeR.Rcheck' * using R version 2.14.2 (2012-02-29) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'BiomarkeR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'BiomarkeR' version '1.3' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'BiomarkeR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: BIdata.RData.Rd:27-28: Dropping empty section \details prepare_Rd: BIdata.RData.Rd:29-30: Dropping empty section \source prepare_Rd: BIdata.RData.Rd:31-32: Dropping empty section \references prepare_Rd: pBI.Rd:52-53: Dropping empty section \note prepare_Rd: pBIGraph.Rd:57-58: Dropping empty section \note prepare_Rd: pBIGraph.Rd:52-53: Dropping empty section \references prepare_Rd: uBI.Rd:53-54: Dropping empty section \note prepare_Rd: uBIGraph.Rd:54-55: Dropping empty section \note prepare_Rd: uBIGraph.Rd:49-50: Dropping empty section \references * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... OK * checking re-building of vignette PDFs ... OK * checking PDF version of manual ... OK