* using log directory 'd:/Rcompile/CRANpkg/local/2.14/HandTill2001.Rcheck' * using R version 2.14.2 (2012-02-29) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'HandTill2001/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'HandTill2001' version '0.2-7' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'HandTill2001' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking examples ... OK * checking for unstated dependencies in tests ... OK * checking tests ... OK Running 'auc.R' Running 'constructors.R' * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... OK * checking re-building of vignette PDFs ... NOTE Error in re-building vignettes: ... [3] LaTeX Warning: Citation `marmion2009' on page 4 undefined on input line 181. ! Undefined control sequence. > predicted <- Reduce(' +', lapply(li, function(x) l.184 ...ted <- Reduce('+', lapply(li, function(x) ? ! Emergency stop. > predicted <- Reduce(' +', lapply(li, function(x) l.184 ...ted <- Reduce('+', lapply(li, function(x) ! ==> Fatal error occurred, no output PDF file produced! Transcript written on consensus_auc.log. texify: pdflatex failed for some reason (see log file). make[2]: *** [pdf] Error 1 make[2]: Leaving directory `/cygdrive/d/RCompile/CRANpkg/local/2.14/HandTill2001.Rcheck/vign_test/HandTill2001/vignettes' make[1]: *** [all] Error 2 make[1]: Leaving directory `/cygdrive/d/RCompile/CRANpkg/local/2.14/HandTill2001.Rcheck/vign_test/HandTill2001/vignettes' Error in buildVignettes(dir = "d:/Rcompile/CRANpkg/local/2.14/HandTill2001.Rcheck/vign_test/HandTill2001") : running 'make' failed Execution halted * checking PDF version of manual ... OK