* using log directory 'd:/Rcompile/CRANpkg/local/2.14/VGAM.Rcheck' * using R version 2.14.2 (2012-02-29) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'VGAM/DESCRIPTION' ... OK * this is package 'VGAM' version '0.9-0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'VGAM' can be installed ... OK * checking installed package size ... NOTE installed size is 5.2Mb sub-directories of 1Mb or more: R 1.1Mb help 2.1Mb * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Coef.qrrvglm: no visible binding for global variable 'optimum' Coef.qrrvglm: no visible binding for global variable 'Darray' Coef.qrrvglm: no visible binding for global variable 'Tolerance' callcqoc: no visible binding for '<<-' assignment to '.VGAM.CQO.cmatrix' callcqoc: no visible binding for '<<-' assignment to '.VGAM.CQO.ocmatrix' calldcaoc: no visible binding for global variable 'U' cao.fit: no visible binding for global variable 'maxitl' cao.fit: no visible binding for global variable 'fv' cqo.fit: no visible binding for global variable 'modelno' cqo.fit: no visible binding for global variable 'quasi.newton' cqo.fit: no visible binding for global variable 'NOS' cqo.fit: no visible binding for global variable 'z' cqo.fit: no visible binding for global variable 'fv' loglinb3 : : no visible binding for global variable 'u3' loglinb3 : : no visible binding for global variable 'u2' loglinb3 : : no visible binding for global variable 'u23' loglinb3 : : no visible binding for global variable 'u1' loglinb3 : : no visible binding for global variable 'u13' loglinb3 : : no visible binding for global variable 'u12' loglinb3 : : no visible binding for global variable 'denom' rrvglm.fit: no visible binding for global variable 'modelno' rrvglm.fit: no visible binding for global variable 'fv' rrvglm.fit: no visible binding for global variable 'one.more' rrvglm.fit: no visible binding for global variable 'rrr.expression' uqo.fit: no visible binding for global variable 'CQO.FastAlgorithm' vgam.fit: no visible binding for global variable 'fv' vglm.fit: no visible binding for global variable 'fv' waldtest_formula: no visible global function definition for 'waldtest_lm' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... OK * checking re-building of vignette PDFs ... OK * checking PDF version of manual ... OK