* using log directory 'd:/Rcompile/CRANpkg/local/2.14/cobs.Rcheck' * using R version 2.14.2 (2012-02-29) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'cobs/DESCRIPTION' ... OK * this is package 'cobs' version '1.2-2' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'cobs' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in tests ... OK * checking tests ... ** running tests for arch 'i386' OK Running 'ex1.R' Comparing 'ex1.Rout' to 'ex1.Rout.save' ...409c409,410 < [1,] 2.30776 16 18 250.3 7.5999 11 --- > [1,] 2.30776 16 18 250.300 7.59990 11 > [2,] 4.51708 16 18 258.955 1.78571 6 447,461c448,462 < 1 -18.0106882 -9.829673 6.86289 23.5555 31.7365 < 2 -15.9869410 -8.308680 7.35806 23.0248 30.7031 < 3 -14.7253888 -7.299594 7.85201 23.0036 30.4294 < 4 -14.0304363 -6.671151 8.34475 23.3607 30.7199 < 5 -13.6842226 -6.277146 8.83627 23.9497 31.3568 < 6 -13.4881963 -5.984331 9.32657 24.6375 32.1413 < 7 -13.2846850 -5.686894 9.81566 25.3182 32.9160 < 8 -12.9604493 -5.308839 10.30352 25.9159 33.5675 < 9 -12.4418507 -4.800749 10.79017 26.3811 34.0222 < 10 -11.6889861 -4.135844 11.27560 26.6871 34.2402 < 11 -10.6923969 -3.307777 11.75982 26.8274 34.2120 < 12 -9.4739638 -2.331231 12.24282 26.8169 33.9596 < 13 -8.0930594 -1.246052 12.72460 26.6952 33.5422 < 14 -6.6587118 -0.125408 13.20516 26.5357 33.0690 < 15 -5.3461742 0.913089 13.68450 26.4559 32.7152 --- > 1 -18.0106904 -9.829675 6.86289 23.5554 31.7365 > 2 -15.9869429 -8.308682 7.35806 23.0248 30.7031 > 3 -14.7253905 -7.299596 7.85201 23.0036 30.4294 > 4 -14.0304378 -6.671153 8.34475 23.3607 30.7199 > 5 -13.6842240 -6.277147 8.83627 23.9497 31.3568 > 6 -13.4881974 -5.984332 9.32657 24.6375 32.1413 > 7 -13.2846860 -5.686895 9.81565 25.3182 32.9160 > 8 -12.9604501 -5.308840 10.30352 25.9159 33.5675 > 9 -12.4418514 -4.800750 10.79017 26.3811 34.0222 > 10 -11.6889866 -4.135844 11.27560 26.6871 34.2402 > 11 -10.6923973 -3.307777 11.75982 26.8274 34.2120 > 12 -9.4739641 -2.331232 12.24282 26.8169 33.9596 > 13 -8.0930597 -1.246053 12.72459 26.6952 33.5422 > 14 -6.6587120 -0.125409 13.20516 26.5357 33.0690 > 15 -5.3461743 0.913089 13.68450 26.4559 32.7152 463c464 < 17 -3.5579639 2.427497 14.64024 26.8530 32.8385 --- > 17 -3.5579640 2.427497 14.64024 26.8530 32.8385 552c553 < [1] 6.862889 10.368778 14.880952 17.119048 19.547619 22.166667 24.976190 --- > [1] 6.862887 10.368778 14.880952 17.119048 19.547619 22.166667 24.976190 569c570,573 < [1,] 0.00279592 15 18 263.5 4 18 --- > [1,] 0.00279592 15 18 263.50 4 18 > [2,] 0.00547257 15 18 263.50 4 18 > [3,] 0.30774511 12 18 263.50 4 18 > [4,] 2.30776272 16 18 264.75 1 15 603c607 < $ ifl : int [1:25] 18 1 1 1 1 1 1 1 1 1 ... --- > $ ifl : int [1:25] 18 18 1 1 1 1 1 18 1 1 ... 615c619 < 8 -15.261611 -6.733216 10.66814 28.0695 36.5979 --- > 8 -15.261611 -6.733215 10.66814 28.0695 36.5979 882,883c886,887 < Warning message: < In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) : --- > Warning messages: > 1: In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) : 885a890,891 > 2: In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) : > Check 'ifl' 889a896,899 > > **** ERROR in algorithm: ifl = 18 > > 893c903 < R^2 = 95.93% ; empirical tau (over all): 245/500 = 0.49 (target tau= 0.5) --- > R^2 = 95.93% ; empirical tau (over all): 247/500 = 0.494 (target tau= 0.5) 909c919 < R^2 = 96.02% ; empirical tau (over all): 247/500 = 0.494 (target tau= 0.5) --- > R^2 = 96.02% ; empirical tau (over all): 248/500 = 0.496 (target tau= 0.5) 1289c1299 < [21] -1.82479e+00 3.65435e-11 --- > [21] -1.82479e+00 3.65434e-11 Running 'ex2-long.R' Comparing 'ex2-long.Rout' to 'ex2-long.Rout.save' ...30c30 < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ... --- > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ... 176c176 < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ... --- > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ... 308c308 < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ... --- > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ... 446c446 < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ... --- > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ... 584c584 < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ... --- > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ... 719c719 < [61] -0.0094285 432.6957870 --- > [61] -0.0094285 432.6957858 1356c1356 < $ icyc : int 51 --- > $ icyc : int 50 1477c1477 < [57] 0.40976 0.40976 0.40976 0.40976 0.38342 386.84287 --- > [57] 0.40976 0.40976 0.40976 0.40976 0.38342 386.84235 1484c1484 < [1] 0.8153 --- > [1] 0.81529 1488c1488 < [1] 0.81885 --- > [1] 0.81881 Running 'ex3.R' Comparing 'ex3.Rout' to 'ex3.Rout.save' ... OK Running 'multi-constr.R' Comparing 'multi-constr.Rout' to 'multi-constr.Rout.save' ...257,258d256 < Warning message: < In cobs(x, y, constraint = "increase", pointwise = con) : Check 'ifl' Running 'pt-ex.R' Running 'roof.R' Comparing 'roof.Rout' to 'roof.Rout.save' ... OK Running 'small-ex.R' Comparing 'small-ex.Rout' to 'small-ex.Rout.save' ... OK Running 'spline-ex.R' Comparing 'spline-ex.Rout' to 'spline-ex.Rout.save' ... OK Running 'temp.R' Comparing 'temp.Rout' to 'temp.Rout.save' ... OK Running 'wind.R' Comparing 'wind.Rout' to 'wind.Rout.save' ...99c99 < R^2 = 8.22% ; empirical tau (over all): 3287/6574 = 0.5 (target tau= 0.5) --- > R^2 = 8.22% ; empirical tau (over all): 3286/6574 = 0.4998479 (target tau= 0.5) 239a240,242 > Warning in cobs(day, speed, knots.add = TRUE, constraint = "periodic", nknots = 10, : > The algorithm has not converged after 100 iterations for at least one lambda > Check to make sure that your constraint is feasible 376c379 < empirical tau (over all): 658/6574 = 0.1000913 (target tau= 0.1) --- > empirical tau (over all): 657/6574 = 0.09993915 (target tau= 0.1) ** running tests for arch 'x64' OK Running 'ex1.R' Comparing 'ex1.Rout' to 'ex1.Rout.save' ...409c409,410 < [1,] 2.30776 16 18 250.3 7.5999 11 --- > [1,] 2.30776 16 18 250.300 7.59990 11 > [2,] 4.51708 16 18 258.955 1.78571 6 447,453c448,454 < 1 -18.0106902 -9.829675 6.86289 23.5554 31.7365 < 2 -15.9869427 -8.308682 7.35806 23.0248 30.7031 < 3 -14.7253903 -7.299595 7.85201 23.0036 30.4294 < 4 -14.0304377 -6.671152 8.34475 23.3607 30.7199 < 5 -13.6842238 -6.277147 8.83627 23.9497 31.3568 < 6 -13.4881973 -5.984332 9.32657 24.6375 32.1413 < 7 -13.2846859 -5.686895 9.81565 25.3182 32.9160 --- > 1 -18.0106904 -9.829675 6.86289 23.5554 31.7365 > 2 -15.9869429 -8.308682 7.35806 23.0248 30.7031 > 3 -14.7253905 -7.299596 7.85201 23.0036 30.4294 > 4 -14.0304378 -6.671153 8.34475 23.3607 30.7199 > 5 -13.6842240 -6.277147 8.83627 23.9497 31.3568 > 6 -13.4881974 -5.984332 9.32657 24.6375 32.1413 > 7 -13.2846860 -5.686895 9.81565 25.3182 32.9160 569,572c570,573 < [1,] 0.0107117 16 18 263.500 4.00000 18 < [2,] 0.3077451 12 18 263.500 4.00000 18 < [3,] 1.1790290 15 18 263.944 1.77778 16 < [4,] 2.3077627 16 18 264.750 1.00000 15 --- > [1,] 0.00279592 15 18 263.50 4 18 > [2,] 0.00547257 15 18 263.50 4 18 > [3,] 0.30774511 12 18 263.50 4 18 > [4,] 2.30776272 16 18 264.75 1 15 606c607 < $ ifl : int [1:25] 1 1 18 1 1 1 1 18 1 18 ... --- > $ ifl : int [1:25] 18 18 1 1 1 1 1 18 1 1 ... 885,886c886,887 < Warning message: < In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) : --- > Warning messages: > 1: In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) : 888a890,891 > 2: In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) : > Check 'ifl' 892a896,899 > > **** ERROR in algorithm: ifl = 18 > > 896c903 < R^2 = 95.93% ; empirical tau (over all): 246/500 = 0.492 (target tau= 0.5) --- > R^2 = 95.93% ; empirical tau (over all): 247/500 = 0.494 (target tau= 0.5) 906,908d912 < Warning message: < In cobs(x, y, "decrease", knots = ux, nknots = length(ux), degree = 1) : < Check 'ifl' 912,915d915 < < **** ERROR in algorithm: ifl = 18 < < 919c919 < R^2 = 96.02% ; empirical tau (over all): 250/500 = 0.5 (target tau= 0.5) --- > R^2 = 96.02% ; empirical tau (over all): 248/500 = 0.496 (target tau= 0.5) 1299c1299 < [21] -1.82479e+00 3.65435e-11 --- > [21] -1.82479e+00 3.65434e-11 Running 'ex2-long.R' Comparing 'ex2-long.Rout' to 'ex2-long.Rout.save' ...30c30 < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ... --- > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ... 176c176 < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ... --- > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ... 308c308 < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ... --- > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ... 446c446 < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ... --- > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ... 584c584 < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ... --- > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ... 719c719 < [61] -0.0094285 432.6957894 --- > [61] -0.0094285 432.6957858 1477c1477 < [57] 0.40976 0.40976 0.40976 0.40976 0.38342 386.84256 --- > [57] 0.40976 0.40976 0.40976 0.40976 0.38342 386.84235 1484c1484 < [1] 0.81533 --- > [1] 0.81529 1488c1488 < [1] 0.81897 --- > [1] 0.81881 Running 'ex3.R' Comparing 'ex3.Rout' to 'ex3.Rout.save' ... OK Running 'multi-constr.R' Comparing 'multi-constr.Rout' to 'multi-constr.Rout.save' ...257,258d256 < Warning message: < In cobs(x, y, constraint = "increase", pointwise = con) : Check 'ifl' Running 'pt-ex.R' Running 'roof.R' Comparing 'roof.Rout' to 'roof.Rout.save' ... OK Running 'small-ex.R' Comparing 'small-ex.Rout' to 'small-ex.Rout.save' ... OK Running 'spline-ex.R' Comparing 'spline-ex.Rout' to 'spline-ex.Rout.save' ... OK Running 'temp.R' Comparing 'temp.Rout' to 'temp.Rout.save' ... OK Running 'wind.R' Comparing 'wind.Rout' to 'wind.Rout.save' ...99c99 < R^2 = 8.22% ; empirical tau (over all): 3287/6574 = 0.5 (target tau= 0.5) --- > R^2 = 8.22% ; empirical tau (over all): 3286/6574 = 0.4998479 (target tau= 0.5) * checking PDF version of manual ... OK