* using log directory 'd:/Rcompile/CRANpkg/local/2.14/ipred.Rcheck' * using R version 2.14.2 (2012-02-29) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'ipred/DESCRIPTION' ... OK * this is package 'ipred' version '0.9-1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'ipred' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** checking differences from 'ipred-Ex_i386.Rout' to 'ipred-Ex.Rout.save' ... 245c245 < Out-of-bag estimate of misclassification error: 0.0883 --- > Out-of-bag estimate of misclassification error: 0.0912 316c316 < Out-of-bag estimate of Brier's score: 0.1869 --- > Out-of-bag estimate of Brier's score: 0.1854 OK ** running examples for arch 'x64' ... OK ** checking differences from 'ipred-Ex_x64.Rout' to 'ipred-Ex.Rout.save' ... 279c279 < Out-of-bag estimate of root mean squared error: 4.0618 --- > Out-of-bag estimate of root mean squared error: 4.1029 294c294 < Out-of-bag estimate of root mean squared error: 2.8532 --- > Out-of-bag estimate of root mean squared error: 2.8485 316c316 < Out-of-bag estimate of Brier's score: 0.2003 --- > Out-of-bag estimate of Brier's score: 0.1854 OK * checking for unstated dependencies in tests ... OK * checking tests ... ** running tests for arch 'i386' OK Running 'ipred-bugs.R' Comparing 'ipred-bugs.Rout' to 'ipred-bugs.Rout.save' ... OK Running 'ipred-segfault.R' Comparing 'ipred-segfault.Rout' to 'ipred-segfault.Rout.save' ...372c372 < Brier's score: 0.0825 --- > Brier's score: 0.0824 Running 'ipred-smalltest.R' Comparing 'ipred-smalltest.Rout' to 'ipred-smalltest.Rout.save' ... OK ** running tests for arch 'x64' OK Running 'ipred-bugs.R' Comparing 'ipred-bugs.Rout' to 'ipred-bugs.Rout.save' ... OK Running 'ipred-segfault.R' Comparing 'ipred-segfault.Rout' to 'ipred-segfault.Rout.save' ... OK Running 'ipred-smalltest.R' Comparing 'ipred-smalltest.Rout' to 'ipred-smalltest.Rout.save' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... OK * checking re-building of vignette PDFs ... OK * checking PDF version of manual ... OK