* using log directory 'd:/Rcompile/CRANpkg/local/2.14/lpc.Rcheck' * using R version 2.14.2 (2012-02-29) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'lpc/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'lpc' version '1.0.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'lpc' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: EstimateLPCFDR.Rd:146: Dropping empty section \keyword prepare_Rd: EstimateLPCFDR.Rd:147: Dropping empty section \keyword prepare_Rd: EstimateLPCFDR.Rd:64-65: Dropping empty section \note prepare_Rd: EstimateLPCFDR.Rd:66: Dropping empty section \seealso prepare_Rd: EstimateTFDR.Rd:144: Dropping empty section \keyword prepare_Rd: EstimateTFDR.Rd:145: Dropping empty section \keyword prepare_Rd: EstimateTFDR.Rd:59-60: Dropping empty section \note prepare_Rd: EstimateTFDR.Rd:61: Dropping empty section \seealso prepare_Rd: LPC.Rd:205: Dropping empty section \keyword prepare_Rd: LPC.Rd:206: Dropping empty section \keyword prepare_Rd: LPC.Rd:76-77: Dropping empty section \note prepare_Rd: LPC.Rd:78: Dropping empty section \seealso prepare_Rd: PlotFDRs.Rd:115: Dropping empty section \keyword prepare_Rd: PlotFDRs.Rd:116: Dropping empty section \keyword prepare_Rd: PlotFDRs.Rd:18-20: Dropping empty section \details prepare_Rd: PlotFDRs.Rd:30-31: Dropping empty section \note prepare_Rd: PlotFDRs.Rd:32: Dropping empty section \seealso prepare_Rd: PredictiveAdvantage.Rd:159: Dropping empty section \keyword prepare_Rd: PredictiveAdvantage.Rd:160: Dropping empty section \keyword prepare_Rd: PredictiveAdvantage.Rd:72-73: Dropping empty section \note prepare_Rd: PredictiveAdvantage.Rd:74: Dropping empty section \seealso prepare_Rd: PrintGeneList.Rd:120: Dropping empty section \keyword prepare_Rd: PrintGeneList.Rd:121: Dropping empty section \keyword prepare_Rd: PrintGeneList.Rd:24-25: Dropping empty section \details prepare_Rd: PrintGeneList.Rd:35-36: Dropping empty section \note prepare_Rd: PrintGeneList.Rd:37: Dropping empty section \seealso * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'lpc-internal': 'print.lpcobj' 'print.lpcfdrobj' 'print.tfdrobj' The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking PDF version of manual ... OK