Co-correspondence analysis methods

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Documentation for package ‘cocorresp’ version 0.2-0

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cocorresp-package Co-correspondence analysis ordination methods for community ecology
beetles Carabid beetles and vascular plants in Dutch roadside verges
bryophyte Bryophytes and vascular plants in Carpathian spring meadows
coca Fit Co-Correspondence Analysis Ordination Models
coca.default Fit Co-Correspondence Analysis Ordination Models
coca.formula Fit Co-Correspondence Analysis Ordination Models
cocorresp Co-correspondence analysis ordination methods for community ecology
coinertia Co-inertia analysis
coinertia.default Co-inertia analysis
coinertiaI Coinertia analysis with identity matrices
corAxis Correlation between ordination axes
corAxis.default Correlation between ordination axes
corAxis.symcoca Correlation between ordination axes
crossval Cross-validation for predictive Co-Correspondence Analysis models
envfit.coca Fit an environmental vector or factor to a Co-CA ordination
fitCoinertia Co-inertia analysis
fitted.symcoca Fitted values of a Symmetric Co-Correpsondence analysis model.
mcChi Standardised chi-square residuals
permutest.coca Permutation test for predictive co-correspondence analysis models
plants Carabid beetles and vascular plants in Dutch roadside verges
plot.predcoca Biplots for predictive co-correspondence analysis
plot.symcoca Biplots for symmetric co-correspondence analysis
points.coca Add points to a Co-CA plot
print.crossval Cross-validation for predictive Co-Correspondence Analysis models
print.fitCoinertia Co-inertia analysis
print.fitted.symcoca Fitted values of a Symmetric Co-Correpsondence analysis model.
print.permutest.coca Permutation test for predictive co-correspondence analysis models
print.predcoca Fit Co-Correspondence Analysis Ordination Models
print.summary.crossval Cross-validation for predictive Co-Correspondence Analysis models
print.summary.fitCoinertia Co-inertia analysis
print.summary.permutest.coca Permutation test for predictive co-correspondence analysis models
print.summary.predcoca Summarizing Co-CA Model Fits
print.summary.symcoca Summarizing Co-CA Model Fits
print.symcoca Fit Co-Correspondence Analysis Ordination Models
rescale Rescales CoCA species scores
rescale.default Rescales CoCA species scores
rescale.symcoca Rescales CoCA species scores
resid.symcoca Extract Model Residuals
scaleChi Standardised chi-square residuals
scores.predcoca Get Species or Site Scores from an Ordination
scores.symcoca Get Species or Site Scores from an Ordination
simpls Modified version of Sijmen de Jong's SIMPLS
summary.crossval Cross-validation for predictive Co-Correspondence Analysis models
summary.fitCoinertia Co-inertia analysis
summary.permutest.coca Permutation test for predictive co-correspondence analysis models
summary.predcoca Summarizing Co-CA Model Fits
summary.symcoca Summarizing Co-CA Model Fits
vascular Bryophytes and vascular plants in Carpathian spring meadows
verges Carabid beetles and vascular plants in Dutch roadside verges