Clustering Perturbation Stability Analysis

Documentation for package ‘easystab’ version 1.0

easystab-package	Clustering stability analysis using Bayesian perturbations.
easystab	Clustering stability analysis using Bayesian perturbations.
from.hclust	Adapts the output of 'hclust' for input into 'perturbationStability'.
from.kmeans	Adapts a single clustering, or list of clusterings, from 'kmeans' to one usable by 'perturbationStability'.
getOptTheta	Calculates the optimal prior parameter
make2dStabilityImage	Creates an image of the relative regions of stability for a 2d clustering.
perturbationStability	Calculate clustering perturbation stability.
plot.StabilityCollection	Plot the stability scores produced by perturbationStability as a sequence of box plots.
plot.StabilityReport	Display the stability of a clustering as a heat map plot.
print.StabilityCollection	Print a brief summary of the stability of a clustering collection.
print.StabilityReport	Print a brief summary of the stability of an undividual clustering under perturbation.
summary.StabilityCollection	Print a detaild summary of the stability of a clustering collection.
summary.StabilityReport	Print a summary of the stability of an undividual clustering under perturbation.