Calculate density dependent likelihood of a phylogenetic tree

Documentation for package ‘expoTree’ version 0.8.1

expoTree-package	Calculate density dependent likelihood of a phylogenetic tree
expoTree	Calculate density dependent likelihood of a phylogenetic tree
expoTree.optim	Perform optimization to find a maximum likelihood estimate.
expoTreeSurvival	Calculate the probability that at least one lineage is sampled.
infExpoTree	Likelihood calculation without density dependence.
plotLTT	Plot lineages through time.
runExpoTree	Density-dependent likelihood caluculation
sim.trees	Simulates sampled transmission trees.