Circular Genomic Permutation using GWAS p-values of association


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Documentation for package ‘genomicper’ version 1.3

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D G H P R S

genomicper-package Circular Genomic Permutations

-- D --

demo GWAS p_values demo data

-- G --

genome_order Genome Order
genome_permutation Genomic Permutations
genome_permutation_ws Genomic Permutations
genomicper Circular Genomic Permutations
get_results Circular Permutation Results
get_results_ws Circular Permutation Results

-- H --

hsa00010 KEGG pathways
hsa00020 KEGG pathways
hsa00030 KEGG pathways
hsa00040 KEGG pathways
hsa00051 KEGG pathways
hsa00052 KEGG pathways
hsa00053 KEGG pathways
hsa00061 KEGG pathways
hsa00062 KEGG pathways
hsa00071 KEGG pathways
hsa00072 KEGG pathways
hsa00100 KEGG pathways
hsa00120 KEGG pathways
hsa00130 KEGG pathways
hsa00140 KEGG pathways
hsa00190 KEGG pathways
hsa00230 KEGG pathways
hsa00232 KEGG pathways
hsa00240 KEGG pathways
hsa00250 KEGG pathways
hsa00260 KEGG pathways
hsa00270 KEGG pathways
hsa00280 KEGG pathways
hsa00290 KEGG pathways
hsa00300 KEGG pathways
hsa00310 KEGG pathways
hsa00330 KEGG pathways
hsa00340 KEGG pathways
hsa00350 KEGG pathways
hsa00360 KEGG pathways
hsa00380 KEGG pathways
hsa00400 KEGG pathways
hsa00410 KEGG pathways
hsa00430 KEGG pathways
hsa00450 KEGG pathways
hsa00460 KEGG pathways
hsa00471 KEGG pathways
hsa00472 KEGG pathways
hsa00480 KEGG pathways
hsa00500 KEGG pathways
hsa00510 KEGG pathways
hsa00511 KEGG pathways
hsa00512 KEGG pathways
hsa00514 KEGG pathways
hsa00520 KEGG pathways
hsa00524 KEGG pathways
hsa00531 KEGG pathways
hsa00532 KEGG pathways
hsa00533 KEGG pathways
hsa00534 KEGG pathways
hsa00561 KEGG pathways
hsa00562 KEGG pathways
hsa00563 KEGG pathways
hsa00564 KEGG pathways
hsa00565 KEGG pathways
hsa00590 KEGG pathways
hsa00591 KEGG pathways
hsa00592 KEGG pathways
hsa00600 KEGG pathways
hsa00601 KEGG pathways
hsa00603 KEGG pathways
hsa00604 KEGG pathways
hsa00620 KEGG pathways
hsa00630 KEGG pathways
hsa00640 KEGG pathways
hsa00650 KEGG pathways
hsa00670 KEGG pathways
hsa00730 KEGG pathways
hsa00740 KEGG pathways
hsa00750 KEGG pathways
hsa00760 KEGG pathways
hsa00770 KEGG pathways
hsa00780 KEGG pathways
hsa00785 KEGG pathways
hsa00790 KEGG pathways
hsa00830 KEGG pathways
hsa00860 KEGG pathways
hsa00900 KEGG pathways
hsa00910 KEGG pathways
hsa00920 KEGG pathways
hsa00970 KEGG pathways
hsa00980 KEGG pathways
hsa00982 KEGG pathways
hsa00983 KEGG pathways
hsa01040 KEGG pathways
hsa01100 KEGG pathways
hsa02010 KEGG pathways
hsa03010 KEGG pathways
hsa03013 KEGG pathways
hsa03015 KEGG pathways
hsa03018 KEGG pathways
hsa03020 KEGG pathways
hsa03022 KEGG pathways
hsa03030 KEGG pathways
hsa03040 KEGG pathways
hsa03050 KEGG pathways
hsa03060 KEGG pathways
hsa03320 KEGG pathways
hsa03410 KEGG pathways
hsa03420 KEGG pathways
hsa03430 KEGG pathways
hsa03440 KEGG pathways
hsa03450 KEGG pathways
hsa04010 KEGG pathways
hsa04012 KEGG pathways
hsa04020 KEGG pathways
hsa04060 KEGG pathways
hsa04062 KEGG pathways
hsa04070 KEGG pathways
hsa04080 KEGG pathways
hsa04110 KEGG pathways
hsa04114 KEGG pathways
hsa04115 KEGG pathways
hsa04120 KEGG pathways
hsa04122 KEGG pathways
hsa04130 KEGG pathways
hsa04140 KEGG pathways
hsa04141 KEGG pathways
hsa04142 KEGG pathways
hsa04144 KEGG pathways
hsa04145 KEGG pathways
hsa04146 KEGG pathways
hsa04150 KEGG pathways
hsa04210 KEGG pathways
hsa04260 KEGG pathways
hsa04270 KEGG pathways
hsa04310 KEGG pathways
hsa04320 KEGG pathways
hsa04330 KEGG pathways
hsa04340 KEGG pathways
hsa04350 KEGG pathways
hsa04360 KEGG pathways
hsa04370 KEGG pathways
hsa04380 KEGG pathways
hsa04510 KEGG pathways
hsa04512 KEGG pathways
hsa04514 KEGG pathways
hsa04520 KEGG pathways
hsa04530 KEGG pathways
hsa04540 KEGG pathways
hsa04610 KEGG pathways
hsa04612 KEGG pathways
hsa04614 KEGG pathways
hsa04620 KEGG pathways
hsa04621 KEGG pathways
hsa04622 KEGG pathways
hsa04623 KEGG pathways
hsa04630 KEGG pathways
hsa04640 KEGG pathways
hsa04650 KEGG pathways
hsa04660 KEGG pathways
hsa04662 KEGG pathways
hsa04664 KEGG pathways
hsa04666 KEGG pathways
hsa04670 KEGG pathways
hsa04672 KEGG pathways
hsa04710 KEGG pathways
hsa04720 KEGG pathways
hsa04722 KEGG pathways
hsa04730 KEGG pathways
hsa04740 KEGG pathways
hsa04742 KEGG pathways
hsa04744 KEGG pathways
hsa04810 KEGG pathways
hsa04910 KEGG pathways
hsa04912 KEGG pathways
hsa04914 KEGG pathways
hsa04916 KEGG pathways
hsa04920 KEGG pathways
hsa04930 KEGG pathways
hsa04940 KEGG pathways
hsa04950 KEGG pathways
hsa04960 KEGG pathways
hsa04962 KEGG pathways
hsa04964 KEGG pathways
hsa04966 KEGG pathways
hsa04970 KEGG pathways
hsa04971 KEGG pathways
hsa04972 KEGG pathways
hsa04973 KEGG pathways
hsa04974 KEGG pathways
hsa04975 KEGG pathways
hsa04976 KEGG pathways
hsa05010 KEGG pathways
hsa05012 KEGG pathways
hsa05014 KEGG pathways
hsa05016 KEGG pathways
hsa05020 KEGG pathways
hsa05100 KEGG pathways
hsa05110 KEGG pathways
hsa05120 KEGG pathways
hsa05130 KEGG pathways
hsa05131 KEGG pathways
hsa05140 KEGG pathways
hsa05142 KEGG pathways
hsa05144 KEGG pathways
hsa05145 KEGG pathways
hsa05146 KEGG pathways
hsa05150 KEGG pathways
hsa05160 KEGG pathways
hsa05200 KEGG pathways
hsa05210 KEGG pathways
hsa05211 KEGG pathways
hsa05212 KEGG pathways
hsa05213 KEGG pathways
hsa05214 KEGG pathways
hsa05215 KEGG pathways
hsa05216 KEGG pathways
hsa05217 KEGG pathways
hsa05218 KEGG pathways
hsa05219 KEGG pathways
hsa05220 KEGG pathways
hsa05221 KEGG pathways
hsa05222 KEGG pathways
hsa05223 KEGG pathways
hsa05310 KEGG pathways
hsa05320 KEGG pathways
hsa05322 KEGG pathways
hsa05330 KEGG pathways
hsa05332 KEGG pathways
hsa05340 KEGG pathways
hsa05410 KEGG pathways
hsa05412 KEGG pathways
hsa05414 KEGG pathways
hsa05416 KEGG pathways
hsaXXXXX KEGG pathways
HyperBigUniverse_v2 Hypergeometric Test (phyper)

-- P --

pathways Pathways List

-- R --

read2_paths_ws Read Pathways ; Map SNPs to gene-sets/pathways
read_pvals_ws Read GWAS p-values of association

-- S --

SNPs2Genes_ALL SNPs2Genes (all genes)
SNPs2Genes_Distance0 SNPS-Genes annotation to Distance 0 (within a gene)