![[R logo]](../../../doc/html/logo.jpg){kind=logo}
![[Up]](../../../doc/html/left.jpg){kind=small}
![[Top]](../../../doc/html/up.jpg){kind=small}
| phenology-package | The package phenology |
| adapt_parameters | Extract the parameters from a set of parameters ton conform on a dataset. |
| add_phenology | Create a new dataset or add a timeserie to a previous dataset. |
| add_SD | Add SD for a fixed parameter. |
| BE_to_LBLE | Transform a set of parameters from Begin End to LengthB LengthE. |
| compare_AIC | Compares the AIC of several outputs |
| extract_result | Extract the set of parameters from a result object. |
| fit_phenology | Fit the phenology parameters to timeseries of counts. |
| Gratiot | Leatherback nest counts from Gratiot et al. (2006) Figure 1 |
| growlnotify | Send growl notification for MacOs X system. |
| LBLE_to_BE | Transform a set of parameters from LengthB LengthE to Begin End. |
| LBLE_to_L | Transform a set of parameters from LengthB LengthE format to Length |
| likelihood_phenology | Estimate the likelihood of timeseries based on a set of parameters. |
| L_to_LBLE | Transform a set of parameters from Length format to LengthB LengthE |
| map_Gratiot | Likelihood map of Leatherback nest counts |
| map_phenology | Generate a likelihood map varying Phi and Delta. |
| moon_phase | Moon phase based on a date |
| par_init | Calculate initial set of parameters. |
| phenology | Help for phenology package. |
| phenology_MHmcmc | Run the Metropolis-Hastings algorithm for data |
| phenology_MHmcmc_p | Generates set of parameters to be used with phenology_MHmcmc() |
| phenology_swot | Fit a nesting season of marine turtles |
| plot.mcmcComposite | Plot the result of a MCMC search |
| plot.phenology | Plot the phenology from a result. |
| plot.phenologymap | Plot a likelihood map with Delta and Phi varying. |
| plot_delta | Plot a likelihood lineplot obtained after map_phenology. |
| plot_phi | Plot the best likelihood for fixed Phi value. |
| print.phenology | Print the result information from a result object. |
| print.phenologymap | Print information on a phenologymap object. |
| print.phenologyout | Print the information from a ouput object. |
| read_folder | Open all file present in a folder and create a list with these files |
| remove_site | Removes site information from a set of parameters. |
| result_Gratiot | Result of the fit of Leatherback nest counts |
| result_Gratiot1 | Result of the fit of Leatherback nest counts |
| result_Gratiot2 | Result of the fit of Leatherback nest counts |
| result_Gratiot_Flat | Result of the fit of Leatherback nest counts |
| result_Gratiot_mcmc | Result of the mcmc for Leatherback nest counts |
| shift_sinusoid | Shift sinusoid information. |
| summary.mcmcComposite | Summarize the result of a MCMC search |
| summary.phenology | Print the result information from a result object. |
| summary.phenologymap | Print information on a phenologymap object. |
| summary.phenologyout | Print the summary information from a ouput object. |