protr-package |
Protein Sequence Feature Extraction with R |
AAindex |
AAindex Data of 544 Physicochemical and Biological Properties for 20 Amino Acids |
extractAAC |
Amino Acid Composition Descriptor |
extractAPAAC |
Amphiphilic Pseudo Amino Acid Composition Descriptor |
extractCTDC |
CTD Descriptors - Composition |
extractCTDD |
CTD Descriptors - Distribution |
extractCTDT |
CTD Descriptors - Transition |
extractCTriad |
Conjoint Triad Descriptor |
extractDC |
Dipeptide Composition Descriptor |
extractGeary |
Geary Autocorrelation Descriptor |
extractMoran |
Moran Autocorrelation Descriptor |
extractMoreauBroto |
Normalized Moreau-Broto Autocorrelation Descriptor |
extractPAAC |
Pseudo Amino Acid Composition Descriptor |
extractQSO |
Quasi-Sequence-Order (QSO) Descriptor |
extractSOCN |
Sequence-Order-Coupling Numbers |
extractTC |
Tripeptide Composition Descriptor |
getUniProt |
Get Protein Sequences from UniProt by Protein ID |
protcheck |
Check if the protein sequence's amino acid types are in the 20 default types |
protr |
Protein Sequence Feature Extraction with R |
protseg |
Protein Sequence Segmentation |
readFASTA |
Read Protein Sequences in FASTA Format |