SIGNATURE OVERREPRESENTATION ANALYSIS

Documentation for package ‘sigora’ version 0.9.2

create_bg	Create a background set from a comma separated Ensembl BioMart mapping file
dengue_hoang	Example validation dataset for SIGORA
det_out	Save a human readable list of present GPS into a file.
ecm_randall_b6	Example validation dataset for SIGORA
ecm_randall_cba	Example validation dataset for SIGORA
ens_converter	Apply this to convert ENSEMBL IDs to SIGORA IDs
entrez_converter	Apply this to convert Entrez Gene IDs to SIGORA IDs
genename_converter	Map gene names to SIGORA IDs
get_genes	List genes involved in present GPS with weight above a specified threshold for a specific pathway in the summary_results
get_marker_genes	Pathway unique genes (PUGs)
idb_converter	Apply this to convert SIGORA IDs of human or mouse genes to ENSEMBL IDs and gene names.
idb_to_genename	Apply this to convert SIGORA IDs to gene names.
rcc_lenburg	Example validation dataset for SIGORA
related_genes	List genes involved in the present pathway signatures
sezary_vermeer	Example validation dataset for SIGORA
sigora	Signature Overrepresentation Analysis
sigs	SIGORA's most important function
sigs_background	sigs with background restriction
smallpox_rubins	Example validation dataset for SIGORA