Xpose 4 Specific Functions Package

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Documentation for package ‘xpose4specific’ version 4.4.0

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A B C D G I K N P R T W X

xpose4specific-package Xpose 4 specific

-- A --

absval.cwres.vs.cov.bw Absolute conditional weighted residuals vs covariates for Xpose 4
absval.cwres.vs.pred Absolute population conditional weighted residuals vs population predictions for Xpose 4
absval.cwres.vs.pred.by.cov Absolute value of the conditional weighted residuals vs. population predictions, conditioned on covariates, for Xpose 4
absval.dcwres.vs.cov.model.comp Model comparison plots, of absolute differences in goodness-of-fit predictors against covariates, for Xpose 4
absval.dipred.vs.cov.model.comp Model comparison plots, of absolute differences in goodness-of-fit predictors against covariates, for Xpose 4
absval.diwres.vs.cov.model.comp Model comparison plots, of absolute differences in goodness-of-fit predictors against covariates, for Xpose 4
absval.dpred.vs.cov.model.comp Model comparison plots, of absolute differences in goodness-of-fit predictors against covariates, for Xpose 4
absval.dwres.vs.cov.model.comp Model comparison plots, of absolute differences in goodness-of-fit predictors against covariates, for Xpose 4
absval.iwres.cwres.vs.ipred.pred Absolute population weighted residuals vs population predictions, and absolute individual weighted residuals vs individual predictions, for Xpose 4
absval.iwres.vs.cov.bw Absolute weighted residuals vs covariates for Xpose 4
absval.iwres.vs.idv Absolute individual weighted residuals vs population predictions or independent variable for Xpose 4
absval.iwres.vs.ipred Absolute individual weighted residuals vs individual predictions for Xpose 4
absval.iwres.vs.ipred.by.cov Absolute individual weighted residuals vs individual predictions, conditioned on covariates, for Xpose 4
absval.iwres.vs.pred Absolute individual weighted residuals vs population predictions or independent variable for Xpose 4
absval.iwres.wres.vs.ipred.pred Absolute population weighted residuals vs population predictions, and absolute individual weighted residuals vs individual predictions, for Xpose 4
absval.wres.vs.cov.bw Absolute weighted residuals vs covariates for Xpose 4
absval.wres.vs.idv Absolute value of (C)WRES vs. independent variable plot in Xpose4.
absval.wres.vs.pred Absolute population weighted residuals vs population predictions for Xpose 4
absval.wres.vs.pred.by.cov Absolute population weighted residuals vs population predictions, conditioned on covariates, for Xpose 4
add.model.comp Additional model comparison plots, for Xpose 4
addit.gof Additional goodness-of-fit plots, for Xpose 4
autocorr.cwres Autocorrelation of conditional weighted residuals for Xpose 4
autocorr.iwres Autocorrelation of weighted residuals for Xpose 4
autocorr.wres Autocorrelation of weighted residuals for Xpose 4

-- B --

basic.gof Basic goodness-of-fit plots, for Xpose 4
basic.model.comp Basic model comparison plots, for Xpose 4
bootgam.print Print summary information for a bootgam or bootscm

-- C --

cat.dv.vs.idv.sb Categorical observations vs. idependent variable using stacked bars.
cat.pc Categorical (visual) predictive check.
check.gamobj GAM functions for Xpose 4
cov.hist Plot the parameter or covariate distributions using a histogram
cov.qq Plot the parameter or covariate distributions using quantile-quantile (Q-Q) plots
cov.splom Plot scatterplot matrices of parameters, random parameters or covariates
cov.summary Summarize individual parameter values and covariates
cwres.dist.hist Histogram of conditional weighted residuals (CWRES), for Xpose 4
cwres.dist.qq Quantile-quantile plot of conditional weighted residuals (CWRES), for Xpose 4
cwres.vs.cov Conditional Weighted residuals (CWRES) plotted against covariates, for Xpose 4
cwres.vs.idv Population conditional weighted residuals (CWRES) plotted against the independent variable (IDV) for Xpose 4
cwres.vs.idv.bw Box-and-whisker plot of conditional weighted residuals vs the independent variable for Xpose 4
cwres.vs.pred Population conditional weighted residuals (CWRES) plotted against population predictions (PRED) for Xpose 4
cwres.vs.pred.bw Box-and-whisker plot of conditional weighted residuals vs population predictions for Xpose 4
cwres.wres.vs.idv Weighted residuals (WRES) and conditional WRES (CWRES) plotted against the independent variable (IDV) or the population predictions (PRED) for Xpose 4
cwres.wres.vs.pred Weighted residuals (WRES) and conditional WRES (CWRES) plotted against the independent variable (IDV) or the population predictions (PRED) for Xpose 4

-- D --

data.checkout Check through the source dataset to detect problems
dOFV.vs.cov Change in individual objective function value vs. covariate value.
dOFV.vs.id Change in Objective function value vs. removal of individuals.
dOFV1.vs.dOFV2 Change in individual objective function value 1 vs. individual objective function value 2.
dv.preds.vs.idv Observations (DV), individual predictions (IPRED) and population predictions (IPRED) plotted against the independent variable (IDV), for Xpose 4
dv.vs.idv Observations (DV) plotted against the independent variable (IDV) for Xpose 4
dv.vs.ipred Observations (DV) plotted against individual predictions (IPRED) for Xpose 4
dv.vs.ipred.by.cov Dependent variable vs individual predictions, conditioned on covariates, for Xpose 4
dv.vs.ipred.by.idv Dependent variable vs individual predictions, conditioned on independent variable, for Xpose 4
dv.vs.pred Observations (DV) plotted against population predictions (PRED) for Xpose 4
dv.vs.pred.by.cov Dependent variable vs population predictions, conditioned on covariates, for Xpose 4
dv.vs.pred.by.idv Dependent variable vs population predictions, conditioned on independent variable, for Xpose 4
dv.vs.pred.ipred Observations (DV) are plotted against individual predictions (IPRED) and population predictions (PRED), for Xpose 4

-- G --

gof Structured goodness of fit diagnostics.
gofSetup Structured goodness of fit diagnostics.

-- I --

ind.plots Observations (DV), individual predictions (IPRED) and population predictions (PRED) are plotted against the independent variable for every individual in the dataset, for Xpose 4
ind.plots.cwres.hist Histograms of weighted residuals for each individual in an Xpose data object, for Xpose 4
ind.plots.cwres.qq Quantile-quantile plots of weighted residuals for each individual in an Xpose data object, for Xpose 4
ind.plots.wres.hist Histograms of weighted residuals for each individual in an Xpose data object, for Xpose 4
ind.plots.wres.qq Quantile-quantile plots of weighted residuals for each individual in an Xpose data object, for Xpose 4
ipred.vs.idv Individual predictions (IPRED) plotted against the independent variable (IDV) for Xpose 4
iwres.dist.hist Histogram of individual weighted residuals (IWRES), for Xpose 4
iwres.dist.qq Quantile-quantile plot of individual weighted residuals (IWRES), for Xpose 4
iwres.vs.idv Individual weighted residuals (IWRES) plotted against the independent variable (IDV) for Xpose 4

-- K --

kaplan.plot Kaplan-Meier plots of (repeated) time-to-event data

-- N --

npc.coverage Function to plot the coverage of the Numerical Predictive Check

-- P --

parm.hist Plot the parameter or covariate distributions using a histogram
parm.qq Plot the parameter or covariate distributions using quantile-quantile (Q-Q) plots
parm.splom Plot scatterplot matrices of parameters, random parameters or covariates
parm.summary Summarize individual parameter values and covariates
parm.vs.cov Parameters plotted against covariates, for Xpose 4
parm.vs.parm Plot parameters vs other parameters
pred.vs.idv Population predictions (PRED) plotted against the independent variable (IDV) for Xpose 4

-- R --

ranpar.hist Plot the parameter or covariate distributions using a histogram
ranpar.qq Plot the parameter or covariate distributions using quantile-quantile (Q-Q) plots
ranpar.splom Plot scatterplot matrices of parameters, random parameters or covariates
ranpar.vs.cov Random parameters plotted against covariates, for Xpose 4
runsum Print run summary in Xpose 4

-- T --

tabulate.parameters Tabulate the population parameter estimates

-- W --

wres.dist.hist Histogram of weighted residuals (WRES), for Xpose 4
wres.dist.qq Quantile-quantile plot of weighted residuals (WRES), for Xpose 4
wres.vs.cov Weighted residuals (WRES) plotted against covariates, for Xpose 4
wres.vs.idv Population weighted residuals (WRES) plotted against the independent variable (IDV) for Xpose 4
wres.vs.idv.bw Box-and-whisker plot of weighted residuals vs the independent variable for Xpose 4
wres.vs.pred Population weighted residuals (WRES) plotted against population predictions (PRED) for Xpose 4
wres.vs.pred.bw Box-and-whisker plot of weighted residuals vs population predictions for Xpose 4

-- X --

xp.akaike.plot GAM functions for Xpose 4
xp.boot.par.est Compare parameter estimates for covariate coefficients
xp.boot.par.est.corr Correlations between covariate coefficients
xp.check.scope GAM functions for Xpose 4
xp.cook GAM functions for Xpose 4
xp.distr.mod.size Plot of model size distribution for a bootgam or bootscm
xp.dofv.plot OFV difference (optimism) plot.
xp.gam GAM functions for Xpose 4
xp.get.disp Stepwise GAM search for covariates on a parameter (Xpose 4)
xp.inc.prob Inclusion frequency plot
xp.inc.prob.comb.2 Inclusion frequency plot for combination of covariates.
xp.inc.stab.cov Inclusion stability plot
xp.incl.index.cov Plot of inclusion index of covariates.
xp.incl.index.cov.comp Inclusion index individuals, compare between covariates.
xp.incl.index.cov.ind Individual inclusion index
xp.ind.inf.fit GAM functions for Xpose 4
xp.ind.inf.terms GAM functions for Xpose 4
xp.ind.stud.res GAM functions for Xpose 4
xp.plot GAM functions for Xpose 4
xp.scope3 GAM functions for Xpose 4
xp.summary GAM functions for Xpose 4
xpose.gam Stepwise GAM search for covariates on a parameter (Xpose 4)
xpose.license.citation Displays the Xpose license and citation information
xpose.VPC Visual Predictive Check (VPC) using XPOSE
xpose.VPC.both Xpose Visual Predictive Check (VPC) for both continuous and Limit of Quantification data.
xpose.VPC.categorical Xpose visual predictive check for categorical data.
xpPage Structured goodness of fit diagnostics.