Collection of Genetic Data Analysis Tools.

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Documentation for package ‘GeneticTools’ version 0.2.1

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R/GeneticTools-package Loose Collection of Expression and Genotype Analysis Tools, including eQTL and MDR.
annotTrack Example Annotation Track
calcDistances Calculate Distances Between Time Series
eQTL Perform an eQTL Analysis
genotData Simulated Genotype Data
genotypePlot Expression Boxplots
getRegionsOI Filter Annotation File
gtfToBed Extract the Chromosomal Information Required in bed Format from an imported gtf table.
mdr Perform a MDR.
plot-method Plot an eqtl Object
plot-method Plot an MDR Object
plot.eqtl Plot an eqtl Object
plot.mdr Plot an MDR Object
predict.mdr Calculates MDR Ensemble Classifier
print-method Print an eqtl Object
print-method Print an mdr Object
print.eqtl Print an eqtl Object
print.mdr Print an mdr Object
realSNPs Simulated SNP Data
recodeData Recode a Genotype Data Matrix.
summary-method Summarize an eqtl Object
summary.eqtl Summarize an eqtl Object
visTrans Visualize trans-eQTL Results
Xgene Simulated Expression Data