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| HardyWeinberg-package | Graphical tests for Hardy-Weinberg equilibrium |
| af | Function to compute allele frequencies |
| Alzheimer | Genotype frequencies for 70 SNPs related to Alzheimer's disease |
| fisherz | Fisher's z transformation |
| GenerateSamples | Generate genotypic compositions |
| HapMapCHBChr1 | Genotype frequencies for 225 SNPs on chromosome 1 of the CHB population. |
| HardyWeinberg | Graphical tests for Hardy-Weinberg equilibrium |
| HWAlltests | Perform all tests for Hardy-Weinberg equilibrium |
| HWAlr | Compute additive log-ratio transformation |
| HWAlrPlot | Plot genetic markers in additive log-ratio coordinates |
| HWChisq | Chi square tests for Hardy Weinberg equilibrium |
| HWChisqMat | Matrix version of HWChisq |
| HWClr | Compute the centred log-ratio transformation |
| HWClrPlot | Plot genetic markers in centred log-ratio coordinates |
| HWCondProbAB | Compute probability of a genotypic sample |
| HWData | Generate genetic marker data in or out of Hardy-Weinberg Equilibrium |
| HWExact | Exact test for Hardy-Weinberg equilibrium |
| HWExactMat | Matrix version of HWExact |
| HWf | Computation of inbreeding coefficient |
| HWGenotypePlot | Scatter plot of the genotype frequencies |
| HWIlr | Compute isometric log ratio coordinates. |
| HWIlrPlot | Plot bi-allelic genetic markers in isometric log ratio coordinates |
| HWLratio | Likelihood ratio test for Hardy Weinberg equilibrium |
| HWMissing | Test a bi-allelic marker for Hardy-Weinberg equilibrium in the presence of missing genotype information. |
| HWPerm | Permutation test for Hardy-Weinberg equilibrium |
| HWPower | Compute the power of a test for Hardy-Weinberg equilibrium. |
| HWQqplot | A Q-Q plot for Hardy-Weinberg equilibrium |
| HWTernaryPlot | Ternary plot with the Hardy-Weinberg acceptance region |
| ifisherz | Inverse Fisher z transformation |
| mac | Compute the minor allele count. |
| maf | Function to compute minor allele frequencies |
| MakeCounts | Create genotype counts from bi-allelic marker data |
| Markers | SNP data and intensities |
| Mourant | Genotype frequencies for blood group locus MN |
| recode | Recode genotype information |
| UniqueGenotypeCounts | Extract unique genotypic compositions from a matrix |