Negative Binomial Models for RNA-Sequencing Data

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Documentation for package ‘NBPSeq’ version 0.1.8

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arab Arabidopsis RNA-Seq Data Set
estimate.disp Estimate Negative Binomial Dispersion Parameters
estimate.dispersion Estimate Negative Binomial Dispersion
estimate.norm.factors Estiamte Normalization Factors
exact.nb.test Exact Negative Binomial Test for Differential Gene Expression
nb.glm.test Fit Negative Binomial Regression Model and Test for a Regression Coefficient
nbp.test NBP Test for Differential Gene Expression from RNA-Seq Counts
plot.nbp Diagnostic Plots for an NBP Object
prepare.nb.data Prepare the NB Data Structure for RNA-Seq Read Counts
prepare.nbp Prepare the Data Structure for NBP Test
print.nbp Print Contents of an NBP Object
test.coefficient Large-sample Test for a Regression Coefficient in an Negative Binomial Regression Model