EWAS using reference-Free DNA methylation mixture deconvolution

Documentation for package ‘RefFreeEWAS’ version 1.2

BootOneRefFreeEwasModel	One Bootstrap sample for Reference-Free EWAS Model
BootRefFreeEwasModel	Bootstrap for Reference-Free EWAS Model
EstDimIC	Dimension estimation by AIC and BIC
omnibusBoot	Bootstrap-based omnibus test of significance across all features
print.BootRefFreeEwasModel	print.BootRefFreeEwasModel
print.RefFreeEwasModel	print.RefFreeEwasModel
print.summaryBootRefFreeEwasModel	print.summaryBootRefFreeEwasModel
RefFreeEwasModel	Reference-Free EWAS Model
rfEwasExampleBetaValues	Simulated mixed-cell DNA methylation data set
rfEwasExampleCovariate	Simulated covariate for mixed-cell DNA methylation data set
rfEwasExampleTRUEAlpha	True alpha intercepts used in simulation
rfEwasExampleTRUEBeta	True beta coefficients used in simulation (for comparison purposes)
rfEwasExampleTRUEMethDMR	True M matrix (cell-specific methylation values) used in simulation (for comparison purposes)
rfEwasExampleTRUEOmega	True Omega (cell mixture) coefficients used in simulation (for comparison purposes)
summary.BootRefFreeEwasModel	summary.BootRefFreeEwasModel
svdSafe	Safe SVD-like matrix decomposition