Determine significantly responsive branches in phylogenetic trees


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Documentation for package ‘SigTree’ version 1.4

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SigTree-package Determine significantly responsive branches in phylogenetic trees
circularplot2 SigTree Other Functions
edge.colors SigTree Other Functions
export.figtree Function to export a 'NEXUS' file that can be opened in 'FigTree' to produce a plot of the phylogenetic tree with branches colored according to significance of families of p-values
export.inherit Function to produce a CSV file with the p-value for each branch as well as a list of all of the tips in each branch's family
fishers SigTree Other Functions
index.matrix SigTree Other Functions
num.edges SigTree Other Functions
num.internal.nodes SigTree Other Functions
num.tips SigTree Other Functions
num.total.nodes SigTree Other Functions
p.p2.ADJ.p1 SigTree Other Functions
plotphylo2 SigTree Other Functions
plotSigTree Function to plot the phylogenetic tree in R with branches (tips) colored according to significance of families of p-values (tips' p-values)
result SigTree Other Functions
SigTree Determine significantly responsive branches in phylogenetic trees
srt.pvalues SigTree Other Functions
stouffers SigTree Other Functions
tip.colors SigTree Other Functions